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June 29, 2007

The Greatness of Summer

Not a lot of developments over the summer. Usually you hang out with friends, go to class, do homework and hang out with friends. Rinse and repeat, dry and erase, cut and dry, cut and run? Err, enough with the weird phrases.

Interesting thing about living in the dorms. I went to costco recently and bought a gazebo's worth of canned food. Unfortunately I had no can opener. I thought this was a no problem until I went to the nearest Wal-Greens and tried to purchase a can opener for myself. There was none. I went to many stores since then and have yet to find a single can opener. I was not unpissed. I had to have my can opener mailed in from home. Doesn't that very idea kind of makes you laugh? I had my can opener sent in from Anaheim, it's as if the can opener was some sort of mystical savior device that can feed and redeem you in a single twist. Which of course that it is.

I am taking Chinese 1 which is essentially a 10 week accelerated language course. It's the best one of its type in the world. I cannot think of any other university that offers a one year course in two and a half months. Harvard don't do that and Yale don't do that and Stanford ESPECIALLY don't do that. Nuh uh!

My classmates hail from far and wide. There's a guy from Tufts and a guy from Upenn and a guy from Stanford. Gotta admire the mixing pot. Give the mixing pot props.

I got a trillion stories to tell (most of them highly illegal) but I'm going to have to leave you with just the infamous Can Opener one only. Ha! Keep checking the blogs, mistah!

June 28, 2007

Viva Las Vegas

So I just got back from Vegas...and I must say that I loooooove the bay's cool foggy weather. Yes it was nice to be in 110 degree weather for about five minutes, but that’s about my tolerance. It was my third official mini vacation of the summer. I rode around Lake Tahoe (yes the whole lake) right after school was out, and then I went to Palm Springs. I love having 4 day weekends (thanks work!). But so yah Vegas was fun I went to go visit my boyfriend’s family. I didn't really do anything exciting except over eat at buffets and climb (indoors, it was way too hot out)..so to my point.

There is so much wasted energy and resources in that town. Woah..yah how cool you call see the light in space from the pyramid, but I think I care more about penguins and polar bears. And talk about lawns....who in their right mind would waste water (& money) on watering a lawn in a desert. So yes I enjoyed my trip but all it did was remind me of how enjoyment for apparently a lot of people is staring at computer screens wasting money. It sort of makes you come to the realization of what some Americans choose to spend their money and free time on. I'm not trying to say or condemn anyone for going to Vegas is a bad thing. It's just maybe not for me..except for red rocks..which has amazing climbing! All in all, it was a good time, it was nice to meet my boyfriend's family and watch baby videos, but I doubt I'll be heading back to gamble my life away anytime soon.

June 27, 2007

Animals & Climate Change

Another great article - this one's about animal habitat-change research going on at the Museum of Vertebrate Zoology. Link: http://sciencematters.berkeley.edu/archives/volume4/issue28/story1.php



As Director of the Museum of Vertebrate Zoology, Craig Moritz is in charge of more than 710,000 animal specimens such as this albatross. Photo courtesy of Museum of Vertebrate Zoology.

We've all heard the news—climate change is altering the world as we know it. Seas are set to rise and glaciers to melt, drought to parch some lands and scorching temperatures to desiccate others. The effects on us humans are grimly predictable. We'll have to scramble to develop new cars to drive, lands to farm, and sources of water to drink.

But the fate of the birds and beasts who share our planet remains an open question. Will chipmunks and salamanders weather this latest shift in habitat and climate conditions by adapting, or might they fade into extinction? How did they respond to climate change over past millennia, and what can we learn from this?



A tray of bat specimens from the Museum of Vertebrate Zoology's collections are cared for by undergraduate curatorial assistant Rika Setsuda. Photo credit: Anand Varma

Craig Moritz, UC Berkeley professor of Integrative Biology and director of the university's Museum of Vertebrate Zoology (MVZ), is uniquely positioned to help answer that question. By combining traditional systematics – the study of animal specimens collected from the wild – with new molecular and computing tools, he and his staff are analyzing how shifts in climate and habitat have affected animals in epochs past. At the same time, they might help forecast how species will react to climate change in the future.

"The business of the whole museum is understanding the patterns of speciation, extinction, and range change that gave rise to patterns of diversity we see today," Moritz says.

Much of that work begins with the museum's vast collection. Each of the more than 710,000 animal specimens, including stuffed storks, grizzly pelts, and pickled amphibians, is associated with a species name, the date and location where it was collected, and often genetic and photographic information as well.

After Moritz joined the museum as director in 2001, he developed the museum's Biodiversity Informatics laboratory. Since then, staff have painstakingly put the information associated with every specimen online, along with thousands of photos and images of the museum's first fifty years of field notes. Much of that information has been entered into databases containing information about birds, mammals, and reptiles and amphibians from collections around the world.



The Grinnell Project resurvey has found that the pinyon mouse (Peromyscus truei), is expanding its range into higher elevations in California, likely due to climate warming. Photo credit: Chris Conroy, Museum of Vertebrate Zoology

"We're not a public display museum. But through bioinformatics, we can get the collection out of the cabinets and let people know what we have. Anyone can download the data and do what they want with it. Until now, we weren't able to get that information out," Moritz says.

The new format has revolutionized how scientists and others work with the collection. Now able to compare data from more specimens from a wider geographic range, researchers can also overlay spatial information such as annual precipitation and temperature, elevation, vegetation type, and other data collected via satellite. The resulting maps give researchers a new way to evaluate what factors influence a species' range over time.

For example, one of Moritz's specialties is tropical rainforest ecology in Queensland, Australia. "We have a fairly good idea from the fossil record about what temperature and rainfall was like under glacial conditions tens of thousands of years ago. We can ask using modeling where rainforests were likely to have persisted. Then we can use patterns of genetic data we've recovered from our specimens to estimate where species have persisted and how their populations have changed."

Moritz also studies the spatial dynamics of vertebrates in California. Here, he follows in the footsteps of the museum's first director, Joseph Grinnell. In 1908, Grinnell began a 30-year survey of animal populations at more than 700 sites across California. Moritz and the MVZ are re-sampling those same areas 100 years later as part of the ten-year Grinnell Project. By comparing the two sets of specimens, the researchers hope to understand how native species respond to major climate and land use change.



Researchers at the MVZ are layering biological data along with spatial information such as rainfall and temperature in order to gain a better sense of how climate is affecting species ranges. This map shows hotspots of recent speciation, or neoendemism, among native California mammals. Photo credit: Michelle Koo.

"What we've seen already with our work in the Yosemite area has been quite dramatic," Moritz says. "The ranges of a lot of high elevation species like the pika, alpine chipmunks, and Belding's ground squirrels are contracting upwards" where it's cooler. But other high elevation species, such as marmots and Lyell's shrew, seem to be holding their own. "We've seen enough to know that simplistic notions like all high-elevation species or predators will do one thing isn't backed up by our data," Moritz says. "Now we have to think more like ecologists and say, what is it about these organisms – what they eat or where they live or their hibernation patterns – is causing these changes."

Answering those questions is particularly pertinent today, as severe climate change is forecast to occur across California and the West over the next century. "We're trying to determine what species are going to be really hammered by climate change and habitat fragmentation, and which are going to be resilient. If we know that, we can more efficiently target our conservation strategies," Moritz says. Data from Grinnell's collection will allow the scientists to validate their hypotheses against the previous 100 years of climate change in the state.

In addition, California State Parks has asked Moritz and the museum to help identify areas in the state where rapid speciation and evolution is occurring so these places can be protected as new parks. The agency also wants information about patterns of evolution in existing parks that can be highlighted in brochures and educational programs.

"Natural history museums are just at the beginning of some really exciting science. They have a very proud record, but as these new tools come on board, I think Berkeley's well placed to maintain the leadership position," Moritz says.

Berkeley's at it again -Renewable Energy!

From the UC Berkeley press release:

http://www.berkeley.edu/news/media/releases/2007/06/26_jbei.shtml

DOE awards LBNL, UC Berkeley and partners $125 million for biofuels research

Robert Sanders, Media Relations | 26 June 2007

BERKELEY – Berkeley and the Bay Area cemented their position as the nation's center of alternative energy research with the announcement today (Tuesday, June 26) by the Department of Energy of a $125 million, five-year grant to Lawrence Berkeley National Laboratory (LBNL), the University of California, Berkeley, and four other partners to develop better biofuels.

Energy Secretary Samuel W. Bodman announced in Washington, D.C., research grants totaling $375 million to establish three Bioenergy Research Centers in Oak Ridge, Tennessee; Madison, Wisconsin; and near Berkeley, California.

The California center, to be known as the Joint BioEnergy Institute (JBEI), involves six partners: LBNL, Sandia National Laboratories (Sandia), the Lawrence Livermore National Laboratory (LLNL), the UC campuses of Berkeley and Davis, and Stanford University.

"The selection of JBEI is a major vote of confidence in the Bay Area's growing leadership in the national effort to develop new and cleaner sources of renewable energy," said Jay Keasling, UC Berkeley professor of chemical engineering and JBEI's chief executive officer. Keasling also is director of LBNL's Physical Biosciences Division.

UC Berkeley, LBNL and the University of Illinois at Urbana-Champaign were selected earlier this year by oil company BP to receive $500 million over 10 years for an Energy Biosciences Institute to investigate future technologies for biofuels and ways of using the new tools of biology to enhance oil recovery and to sequester carbon. That research contract is due to be signed in July.


"This clearly will make the Bay Area the locus for development of a green tech industry to rival the high tech and biotech industries which started here," said Graham Fleming, a JBEI founder, deputy director at LBNL and Melvin Calvin Distinguished Professor of Chemistry at UC Berkeley. "It is a tremendously exciting day for the Bay Area and the country as a whole."

Plans call for JBEI to be headquartered in a leased building in the East Bay, central to all partners. Initial work will take place at the West Berkeley Biocenter on Potter Street in Berkeley.

"The DOE bioenergy research centers will provide the transformational science needed for bioenergy breakthroughs to advance President Bush's goal of making cellulosic ethanol cost-competitive with gasoline by 2012, and assist in reducing America's gasoline consumption by 20 percent in 10 years," Secretary Bodman said. "The collaborations of academic, corporate, and national laboratory researchers represented by these centers are truly impressive and I am very encouraged by the potential they hold for advancing America's energy security."

Research will center on improvements to current technology for producing ethanol, in particular cellulosic technology for producing ethanol from biomass, and new technologies for producing other biofuels, according to Harvey Blanch, UC Berkeley professor of chemical engineering and JBEI chief science and technology officer. Today's cellulosic ethanol industry is based on 20-year-old technology, he said, in part because federal research funding on biofuels ended when President Ronald Reagan jettisoned most alternative energy research in the 1980s.

In order to catch up, much basic research needs to be done to find out how plant cell walls – the hard lignocelluose that makes plants sturdy – are put together, so that scientists can find a way to take them apart and access the simple sugars they're made from. These sugars could then be fermented along with the simple starches in the plant to produce much more energy than currently possible.

"If (the cellulosic industry) is going to grow and compete economically, even with corn-based materials, a lot of improvements need to be made," Blanch said.

The basic research will benefit from collaborations with UC Davis scientists who have experience with the genetics of rice and a mustard, Arabadopsis thaliana, that is the lab rat or "fruit fly" of plant biology, according to Pam Ronald, chair of the Plant Genomics Program at UC Davis and director of JBEI's grass genetics group.

Blanch anticipates that JBEI could start making an impact on the cellulosic industry within a couple of years, particularly in the area of breaking down biomass into its constituent sugars. Instead of acid hydrolysis, blanch hopes that JBEI scientists can create better and more efficient enzymes to do that, or even an organism that both breaks down lignocellulose and ferments it into fuels such as ethanol, butanol or oil-like alkanes.

JBEI scientists will also develop the tools and infrastructure to accelerate future biofuel research and production efforts, and help transition new technologies into the commercial sector.

"JBEI will be organized like a biotech startup company, with very focused research objectives, and a structure to enable it to quickly pursue promising scientific and technological developments," said Keasling. "The organizational structure and culture is intended to ensure rapid commercialization of JBEI R&D."

"The ultimate goal of the energy centers is to get this into the market," emphasized Ray Orbach, director of the DOE's Office of Science.

The DOE JBEI organization will feature four interdependent science and technology divisions:

* Feedstocks, aimed at improving plants that serve as the raw materials for ethanol and the next generation of biofuels.
* Deconstruction, aimed at investigating the molecular mechanisms behind the breakdown of lignocellulose into fermentable sugars.
* Fuels Synthesis, in which microbes that can efficiently convert sugar into biofuels will be engineered
* Cross-cutting Technologies, which will be dedicated to the development and optimization of enabling technologies that support and integrate the DOE JBEI research.

Keasling draws a distinction between the very focused work of JBEI and the "think-tank" approach of the EBI. EBI's goal is to formulate a comprehensive understanding of biology in the context of energy science, exploring all possibilities in the field and identifying those approaches and technologies that look to be the most promising.

Finally, a vacation!

My scholarship loves doing scholar gatherings so that we do not feel that they are just another source of money for school but a community instead. So, my scholarship decided they want to hold a huge retreat, all expenses paid, 4 days 3 nights, for all scholars in the beautiful Asilomare in the Pacific Grove area 120 miles south of San Francisco. I have never really heard of this resort so I went online to explore and let me tell you, it is absoloutly beautiful. The resort is surrounded with nothing but trees, rivers, lakes, open green areas and just pure natural beauty. In addition, the resort has no TVs, internet, or telephones so that vacationers can truly depart from their everyday busy lives and enjoy their time off. I must say, no TV or internet for 3 days does scare me a tad...I am going to miss my midnight Friends and Sex in the City reruns...ahh! I guess the trees and the birds are going to have to substitute for the weekend. The best part of this retreat is that we get to go horseback riding, whale watching, attend a carmel city festival, and go on a 3 hour hike...I am REALLY excited about this retreat considering this will really be my only vacation this summer. The retreat is from July 13-July 16th...when I get back I'll be sure to post some pictures up!

June 26, 2007

Gearing up for Moorea

Today I used an amazon.com gift card to purchase a few items for Moorea:
Boots

Snorkel kit

Mosquito netting w/ over-bed hoop

full-size roll-up silicone waterproof keyboard


I can't believe that I was able to get all of these items for $50 total. Hopefully the snorkeling fins fit right, and the jungle boots fit, too. Not very girly...

I'm curious what else I still need for the trip. Maybe I'll find similar deals. Time to start looking for a killer waterproof bag...

June 23, 2007

A friend asked...

A friend who studies graphic design asked:
Speaking of,[plants] wikipedia tells me that "The classification of all flowering plants is currently in a state of flux." (as found in http://en.wikipedia.org/wiki/Carnivorous_plants). Is that true? Why's it the case? I haven't read the full wiki article so I apologize if it's answered like two sentences down.

My response:
Yes, it's in a major state of flux! As more is understood about plant genetics, we're understanding plants much better.

Now that we're looking at the genetic data, we can look at the plants in a new context, and find new similarities. Now we're making the family trees from genetic base pair similarities, then adding the physical traits to that genetic tree. We're even trying to figure out what genes give rise to what traits, but we have only started mapping this out for a few test plants (arabadopsis, corn, and rice).

You see, botanists have always based their classifications on traits. Now, with genetics, we have more distinct traits on which we base the relationships (our traits are super basic - A,T,G...). The guys in the 16th century would say, "These plants have similar leaves (bark, flowers, number of flower parts, etc)." Those were their traits. Then they would make a family tree.

Older trees, for the most part, are matching up with current genetic findings - but not always! We're learning that many plants are not as closely related as we thought - and many plants are closely related that we never thought to put together. For instance, look at Dr. Charles Davis' work at Harvard: they used genetic data to determine that a family of leafless saprophytic flowers (otherwise impossible to place) is nested within the Euphorbiaceae - a very diverse group of flowering plants that includes old-world cactus-looking succulents, the rubber tree, and poinsettia.
Link from Science Magazine: http://www.sciencemag.org/cgi/content/full/315/5820/1812?maxtoshow=&HITS=20&hits=20&RESULTFORMAT=&author1=Davis%2C+C&andorexacttitle=or&andorexacttitleabs=or&andorexactfulltext=or&searchid=1&FIRSTINDEX=0&sortspec=relevance&fdate=7/1/1880&tdate=6/30/2007&resourcetype=HWCIT
Link from Smithsonian Magazine: http://www.smithsonianmagazine.com/issues/2007/march/wildthings.php

My primary interest in plants is making genetic trees, then finding developmental similarities and differences, which will basically stand as tic marks on a tree. People can later compile these physical traits into a key, then use the key in the field to identify plants.

In the Specht lab, I'm working with ginger relatives (Zingeberales), and dessicant-tolerant (Cheilanthoid) ferns. This Fall, I'm hoping to work with woody tropical vines (Freycinetia and Pandanus).

Work Party

At noon today, the Ridge House Cooperative is going to band together and do some major fix-it and gardening work. It's called a Work Party, and I'm looking forward to it. Last semester we had several garden work parties. After one of these parties, our garden looks awesome, our house is clean and tidy, and we're a closer, happier community. It's a great time to get to know folks. Here is a photo from a work party last semester.

June 22, 2007

Against Argentine Wine

National Geographic is at it again - excellent reporting on a complex issue.
Link:
http://news.nationalgeographic.com/news/2007/06/070620-argentina-water.html

Wine Boom Threatens Native Argentine Water Source
Lorne Matalon
for National Geographic News
June 20, 2007

The underground water table in central Argentina's Monte Desert is falling, leaving the fate of the centuries-old indigenous Huarpes culture hanging in the balance (see pictures).

Demand for high-quality and still relatively inexpensive Argentine wine, combined with an abundance of land to grow grapes, has become a problem for the desert-dwelling Huarpes.

(Image caption: Cecilia Villegas, an indigenous Huarpe living in Argentina's Monte Desert, said she would have to move if the water level sank further.

About 2,000 Huarpes live in the desert. Others have migrated to Argentina's cities, where they often face bleak economic opportunities.

Photograph by Lorne Matalon)

Vineyard owners are diverting increasing amounts of water from a network of channels and streams originally crafted for irrigation centuries ago by several of Argentina's indigenous groups.

The Monte Desert, where the indigenous people live, is separated from the Andes by Argentina's piedmont region, which has become the center of an expanding wine industry.

"People [here in the desert] live in a system that is harsh yet so far has survived because of one thing, and that's groundwater," said agronomist Esteban Jobbagy of Argentina's National University of San Luis.

"We are in an area where you can walk for days without seeing surface water, yet the aquifer is a source of life."

Jobbagy's research is trying to prove scientifically what some agronomists have begun to suspect—that rapid development between the Andes and the desert is putting pressure on the desert's aquifer.

Tracking the Water Table

Jobbagy is using ultrasonic telemeters to measure water levels at a series of wells in the region. Another tool, called a pressure transducer, obtains continuous measurements of the water table's depth.

Jobbagy and colleagues at Duke University's Nicholas School of the Environment and Earth Sciences in Durham, North Carolina have matched the isotopic signature—the unique molecular structure—of water formed by melting snow from the Andes Mountains to water collected in the desert's aquifer. The regions are separated by about 124 miles (200 kilometers).

The same water shows up in the stems of the Algarrobo tree, which has roots descending 32 feet (10 meters) from the desert floor to the aquifer.

"This desert groundwater is very different than what we'd observe when we analyze the few millimeters of rainwater that fall here each year," Jobbagy said.

The desert water contains molecules that must have originated in the Andes, he said, and that match the molecular structure of water formed in clouds that form between the Pacific and the Andes.

The Atlantic moisture arrives after flowing west from the humid Pampas towards dry regions right below the Andes.

The Pampas is a vast, fertile flatland and the source for much of South America's agricultural production.

A Radical Decision

The loss of wetlands and a wave of European immigration at the turn of the 20th century forced the indigenous Huarpes and Criollos peoples—who once numbered in the tens of thousands and are known today as Lavallinos—to build communities elsewhere.

They made a radical decision: Rather than stream into Argentina's cities, they chose to adapt to the one environment Argentina's immigrants shunned—the harsh 15,440 square-mile (40,000-square-kilometer) Monte Desert.

Now the modern-day heirs to that culture depend on a reliable flow of water from the Andes to the desert.

The water descends a topographic staircase: At the top are the Andes, where melting snow begins its descent into the Mendoza Valley. Below the valley, the water flows into the Monte Desert.

Around 2,000 Huarpes and Criollos of mixed Spanish and indigenous descent live in Monte Desert. They used to live in the Pampas wetlands, but this region has become drier since the onset of large-scale irrigation about 60 years ago.

Native plants and animals also rely on the groundwater to survive.

The Algarrobo tree grows pods that contain many of the same nutrients found in soy. People eat the pods or feed them to their goats and cattle, Jobaggy said.

"It amazes me because these people can harness the resources of the desert that most people could not," he said.

Though dry at first blush, the desert is a deceptively productive environment, Jobbagy said, but only because of its geographic location below the Andes.

Fierce National Pride

The story now is a classic supply-and demand scenario. Argentina suffered the worst monetary default in history in 2002, and since its collapse the country's wine industry has proven to be one of the few profitable large-scale enterprises.

The industry provides jobs, a market for technological innovation in grape processing, and in a nation seared by the economic hardship—a sense of national pride.

Juan Vincelli and Eduardo Levesque head operations in neighboring vineyards 40 miles (64 kilometers) from the desert.

With the snow-capped peaks of the Andes as a backdrop, both say their operations need more water if their industry is to remain profitable.

"I am not honestly aware that what we are doing here with our irrigation systems is hurting anyone," said Levesque, a first-generation Argentine and a leading winemaker whose family sold wine in France before arriving in the Mendoza Valley 50 years ago.

"If our industry is hurting indigenous Argentines, I am willing to discuss solutions," he said. "But I can say that our indigenous culture makes me, as an Argentine, proud."

The greater problem, Levesque said, is that the provincial government is not spending the money to make irrigation systems more efficient.

"You sometimes see dry channels that could be full if blockages from rockslides in the Andes were removed," he added.

Vincelli and Levesque are also among a group of growers and vineyard workers who have made their fields more fertile by buying animal dung from the Huarpes people.

Head Above Water

Cecilia Villegas, a Huerpe, and her nine-year-old grandson live in a square charcoal-gray-colored dwelling called a rancho. It's constructed with wood, stone, metal strips, and bricks made from sun-dried mud. The home is set on a flat patch of sand near a 22-foot (7-meter) deep well.

They are completely self-sufficient in an environment few Argentines ever visit.

Villegas hasn't noticed anything beyond the usual ebb and flow of the water level, which she believes is tied to the changing seasons. The level is typically slightly higher during the Southern Hemisphere's winter.

But she says others have moved to lower ground within the Monte Desert, in valleys several meters closer to the aquifer.

"If the water level fell here," Villegas said, "We would have no choice but to move. And that's a choice we don't want to ever be faced with."

(Related: "Water Pressure" in National Geographic Magazine.)

Changing Tides?

Agronomist Jobbagy tries to raise awareness of the consequences of unfettered water use.

Most vineyards in the Mendoza Valley use the mantle irrigation system, in which an entire field is flooded. However the larger, more profitable, vineyards use drip irrigation, which targets specific rows of trees.

A rubber lining is placed along a line of grape trees and water is pumped through holes in the lining.

"Our society has a choice to make," Jobbagy said. "Do we want to expand irrigation, or do we want to do it without affecting systems like the one indigenous people depend on?"

Admittedly, he said, it only affects hundreds of people, as opposed to the millions who need irrigation for their farms and vineyards.

"But these [indigenous] people are some of the last pieces of a rural culture that makes most Argentines proud."

Freaking out about chem...and the class hasn't even started!

So I am number 46 on the waitlist for Advanced Organic Chemistry (chem 3B). There are at least 150 others on the waitlist along with me. What's odd is that there is enough room in the lecture itself but no rooms in the lab. If I don't get into Chem 3B for the fall semester it's going to completely throw off my entire schedule. The only way this will work is if 46 people magically dropped out of the highly demanded chem 3B before August...or on the more realistic side, the chem department opens up a few more lab sections before the fall semester begins. Let's just hope option 2 happens so I can avoid starting my 2nd year completely stressed out! Pray for me...and if you find out anything about chem 3B let me know!

June 21, 2007

Japan Visa

It's great that Japan and the USA are buddies. There was not a Visa application fee for USA nationals. It was a simple one page form with a required 2x2 passport (I just printed one out from my computer) picture. My certificate of eligibility arrived yesterday (June 20th) from Japan by DHL. I went to apply for the student Visa this morning at the Japan Consulate in San Francisco. The guy said that he had had four other ICU people go through the office these couple days. That's quite exciting. I hope to meet up with them over the summer. The visa will take three days to process. With overnight shipping, I should receive it by the 27th. That's cutting it close, isn't it.

June 20, 2007

Renting....ARgh!!!

So I'm officially tired of looking at overpriced crappy apartments. I'm sure this sounds cliché but I never knew finding a place close to campus that wasn't like $1000 per person a month would be that hard. But atlas, why such aggravation at something I knew? Because....I didn't get the affordable place, close to campus that would take my dog!!! I even baked the landlord cookies, and she still gave it to someone else...AHHHH!! That means tonight instead of going climbing and doing yoga, I get to go look at another place, that’s farther away and is more expensive. To the rest of you good luck finding a place! I tend to be optimistic so I know everything will work out in the end, and yes supposedly everything happens for a reason.

Pygmy Panda!

CNN reports that a skull was found of a smaller giant panda.
Link:
http://www.cnn.com/2007/TECH/science/06/19/panda.skull.ap/index.html

WASHINGTON (AP) -- The first skull of the earliest known ancestor of the giant panda has been discovered in China, researchers report.


Discovery of the skull, estimated to be at least 2 million years old, is reported by Russell L. Ciochon in Tuesday's edition of Proceedings of the National Academy of Sciences.

Ciochon, an anthropologist at the University of Iowa, and a team of U.S. and Chinese researchers, made the find in a limestone cave in south China.

The animal, formally known as Ailuropoda microta, or "pygmy giant panda," would have been about three feet long, compared to the modern giant panda, which averages in excess of five feet (1.52 meters).

Previously this animal had been known only by a few teeth and bones, but a skull had never been found.

Judging by the wear patterns on its teeth it also lived on a diet of bamboo, the main food of the current giant panda, the researchers said.

Other than size, the animal was anatomically similar to today's giant panda, said Ciochon.

The work was funded by the Chinese National Natural Science Foundation and University of Iowa.

Copyright 2007 The Associated Press.

_____________________________________________________
National Geographic reports more in depth on the same topic:
http://news.nationalgeographic.com/news/2007/06/070618-panda-fossil.html

Earliest Panda Skull Reveals Bamboo-Eating "Pygmy"
Scott Norris
for National Geographic News
June 18, 2007

A fossil skull representing the earliest known species of panda has been discovered in China, researchers report.

The find shows that small-bodied, "pygmy" ancestors of the modern giant panda were present in the forests of southern China at least two to three million years ago.

The prehistoric panda's teeth and jaw indicate that the species, Ailuropoda microta, was already adapted to a diet of bamboo, just like the black-and-white giant panda of today, according to experts who examined the fossil.

Skull features also indicate that the early panda may have been remarkably similar to its endangered present-day descendents—but only about half the size. (Related: "Panda Sanctuary in China Named World Heritage Site" [July 18, 2006].)

"One can call the fossil species the 'pygmy giant panda,'" said Russell Ciochon of the University of Iowa. "It really is a miniaturized version of the living giant panda."

A few fossil teeth from A. microta had previously been found, but the creature's size remained a mystery until now. The first complete skull provides a far richer picture of the bear's biology, Ciochan said.

A team led by Changzhu Jin of the Chinese Academy of Sciences in Beijing found the skull embedded in the wall of a limestone cave in China's Guangxi Zhuang Autonomous Region.

The report by Jin, Ciochon, and colleagues appears in today's online edition of the U.S. journal Proceedings of the National Academy of Sciences.

Bamboo Chewers

Although giant pandas are technically classified as carnivores, the animals are unique among bears in having adopted an entirely vegetarian diet.

The new fossil proves that pandas' dietary preference for bamboo evolved quite early, Ciochon said.

"The panda lineage has been evolving for several million years totally separated from their traditional bear ancestry," he added.

Specialized adaptations to bamboo feeding include strong jaws and robust teeth for grinding down tough plant material.

Modern giant pandas also have a "false thumb" that allows them to strip the leaves off bamboo stalks. Ciochon is hopeful that additional fossils will reveal whether the pygmy giant panda had the same unusual adaptation.

"It is very much needed to eat bamboo," Ciochon said. "If this was a committed bamboo eater early on, one would expect [the false thumb] adaptation was evolving."

Another species, the raccoon-like animal known as the red panda, also has a false thumb. But genetic studies have shown that the two "pandas" are not closely related, with only the giant panda classified among the bears.

Mauricio Antón, of Spain's National Museum of Natural Sciences, in Madrid, has studied the separate evolution of the false thumb adaptation in red and giant pandas.

Antón said the new skull "is an important discovery that fills a gap in our knowledge of the evolution of the lineage leading to the extant giant panda."

Scientists have long debated the exact classification of pandas because of their mix of bear- and raccoon-like features, Antón said.

"The intermediate features of the new fossil further confirm the giant panda's place in the bear lineage, completely separated from the red, or lesser, panda."

A Pygmy Among Giants

The discovery of the pygmy giant panda fossil shows that body size in the panda lineage has shifted back and forth over evolutionary time. A more recent ancestor, living less than a million years ago, was larger than the giant pandas of today.

Pandas have also shifted their range in response to the enormous environmental changes over the past three million years.

"When the [past] ice ages were occurring in northern China, the distribution of bamboo moved southward, as did the giant panda," study co-author Ciochon said.

The moist tropical forest favored by the pygmy giant panda was also home to other early relatives of creatures alive today.

The diminutive panda lived side-by-side with the stegodon, a 13-foot-tall (4-meter-tall) ancestor of mammoths and elephants.

Also present was Gigantopithecus, a giant ape two to three times larger than the modern gorilla.

Today only a few thousand giant pandas persist in the wild, in upland bamboo forests isolated by rugged mountains in China's Sichuan Province.

Fast-Paced Moms

Here's a book review that stands out. Not because it has anything to do with plants, but because it mentions moms who are PHDs. I hope to have a PHD someday, and being a mom doesn't seem too far out of the picture. Seems like all the women researchers, professors, and curators I know don't have children. It's good to read about how having children can affect a career in academia.

Article from the Berkeley news feed:
http://www.berkeley.edu/news/media/releases/2007/06/12_moms.shtml
New book outlines discrimination against moms

By Yasmin Anwar, Media Relations | 12 June 2007

BERKELEY – Three decades after women began breaking into male-dominated professions, their numbers in top academic and corporate echelons remain flat, according to Mary Ann Mason, graduate dean at the University of California, Berkeley.

Largely to blame are family demands and "maternal discrimination," according to "Mothers on the Fast Track: How a New Generation can Balance Family and Careers" (Oxford University Press, 2007), a new book Mason has co-authored with her daughter, Eve Mason Ekman.

Mothers on the Fast Track" is based on longitudinal research that not only tracked Ph. D. students, but also women in such competitive, male-dominated professions as law, medicine, business and journalism. It documents how generations of women have veered off the career fast-lane after having children - while their male counterparts with families flourished - and argues that ambitious women should not have to settle for second-tier jobs just because they took time off to raise kids.

"Society is losing some of its best and brightest," said Mason, UC Berkeley's first female graduate dean. "It's important to have women in major decision-making positions. It makes a difference in medical research, politics, business, and at all levels. Women have to be in more positions of influence."

According to Mason, women make up only 5 percent of managing partners in law firms, less than 20 percent of medical school deans, 9 percent of National Academy of Science members and 8 percent of top managers in Fortune 500 companies.

The book offers strategies for younger women who seek high-level jobs and families, and to older women hoping to resume, after taking a break to raise families, their climb to upper management and break through what Mason calls "the second glass ceiling."

"If they have the opportunity, mothers go back to work in their 40s, but a lot end up in second-tier jobs," Mason said. "They're not players anymore. They've lost their position in the game."


Mary Ann Mason (Peg Skorpinski photo)

During her first year as graduate dean in 2000, Mason assembled a research team to look into how having families affect both men and women in academia. The results led to family-friendly policies at UC Berkeley for faculty and graduate students that have made the campus a tenure-track model for the nation.

Though the number of women entering graduate and professional schools is steadily rising (approximately half of UC Berkeley's graduate students are female), Mason said her research shows that most women drop off the fast track some time between starting their Ph.D. and landing their first tenure-track job.

After all, the "make-it-or-break-it" years, according to Mason, are between ages 30 and 40, when both men and women must make their professional mark. Yet, it is also during these years that women hear their biological clocks ticking most loudly and the pressure to start a family crests.

Another challenge for today's women, Mason says, is a backlash she calls the "new mom-ism" - the push for mothers to devote enormous amounts of time and energy to their children. "In the past, we were never expected to spend this much time with our children," Mason said.

Essentially, "Mothers on the Fast Track" is a sequel to Mason's 2002 research project, "Do Babies Matter?" which documents the effects of family on academic careers. Along with her longtime research collaborator Marc Goulden, Mason analyzed various databases that track women who enter Ph.D. programs, as well as women in law, business, medicine and the media.

For the 2007 book, Ekman, a medical social worker at San Francisco County General Hospital and an aspiring journalist, conducted interviews with dozens of women ranging in age from their 20s to their 60s.

From 1966 to 2000, the book says, the number of women with Ph.D.s rose from 10 percent to more than 40 percent, according to figures provided by the National Center for Education Statistics. Yet, in a 1999 survey of UC Berkeley and Lawrence Berkeley National Laboratory students, 59 percent of the female post-doctorates with children polled cited the concern over how to balance career and family as a main reason for leaving the sciences.

To remedy such trends in both the academic and corporate worlds, employers must provide more flexibility to working mothers through reentry options and upper management training, the authors write. In addition, legislation is needed to prevent maternal discrimination, just as it guards women from sexual harassment and other threats in the workplace, Mason said.

Mason is a former lawyer and an expert on child custody issues. "Mothers on the Fast Track" is largely inspired by her personal struggle to balance family and career, as well as by her interactions with female graduate students who would frequently ask her, "When is the best time to have a baby?"

She is the author of "From Father's Property to Children's Rights," "The Custody Wars," and "The Equality Trap." Last month, Mason received the Berkeley Citation, one of the campus's highest honors, in recognition of her outstanding service to UC Berkeley and its graduate students.

As UC Berkeley's first female graduate dean, Mason said she used her "bully pulpit" to push through family-friendly policies. Her efforts helped secure more than $500,000 in grant money from the Arthur P. Sloan Foundation to help UC Berkeley faculty members balance family and career.

The new campus policies include provisions for new mothers to take off two semesters to care for their babies, and part-time appointments to address family needs. Women's and men's use of these provisions cannot be used against them in their performance reviews. As of this fall, women doctoral students who hold fellowships or posts as graduate-student instructors or researchers at UC Berkeley will be eligible for six weeks' paid maternity leave.

Mason said when she talks with female graduate students about the trends outlined in "Mothers on the Fast Track," they get "glummer and glummer." But she encourages them to keep up the good fight.

"The culture does change, especially when you have women in top positions," she said. "Women can have it all, they just need more support."

June 17, 2007

MCAT - June 15th

I took the 1:30 pm MCAT on Friday, June 15th.
When they say to get there early, they mean it. I recommend getting there 50 minutes early to deal with check in and things. The test is proctored by Thompson Testing Centers. They administer multiple tests which overlap. I had to wait 40 minutes before a computer and locker opened up so that I could begin. Since each computer has its own timer and everything, it isn't an issue. You want to get there early so that you get to your writing section about the same time other people do. The typing is just crazy loud in that quiet room.

Physics: died
the rest: relatively good.

=)

They did a good job in choosing interesting passages.

Off for summer!

So my summer vacation has effectively come to a close. No, I'm not going back to Berkeley for summer school. I'm actually heading to Asia for the next two months. I will be going with my Christian fellowship, ICA. There will be students going to different countries to teach English to high school students. People I've talked to have said that this program is very difficult and challenging, but also provides an avenue for a great deal of growth.

Alright, well, I best be getting ready to go. Have a good summer, everyone!

Fan

Yesterday afternoon Tom and I drove down to Target to pick up a fan. Saturdays at Target in Albany are CRAZY busy. We parked far away, walked quickly, found the fan section on the second floor next to home improvement. We then looked at all the fans. Tons of fans. So many different kinds of fans. Air-purifying tower fans, window fans, swivel-neck tall fans, high-velocity desk fans, multi-colored children's fans. There was a fan for everyone. Wedged in the corner on the top shelf is where we found a supply of box fans. "Hawaiin breeze 20 in box fan." It happened to be the cheapest fan, at $11.00. Its features: 3 speeds!

We decided on the box fan. We brought it home. It's narrow, white, and fits in our big-ish window nicely. We turned it on. Now we understand why they chose to call it "Hawaiin breeze". Speed 1 is a hurricane. Speed 2 is a tsunami. Speed 3 is... well, make up your own word. I don't quite understand how we managed to get the strongest fan possible for the cheapest price in the store, but hey - we're happy.

June 14, 2007

Uh, this is going to be a HOT summer..

Who ever said community college was easy obviously never attended a community college class. Here I am in the midst of the Sacramento summer heat waking up every morning at 8 to get to my "easy" community college macroeconomic class and sit through two hours and ten minutes of ridiculously crammed 3 months worth of economic material! Who ever said community college was easy is WRONG. My easy community college econ professor once taught at Columbia University, Sacramento State, UC Davis, UC Santa Barbara, and MIT, do you think he changed his material to better fit the community college? Absolutely not. So much for an easy summer. Oh well, I guess now I'll better understand how my shopaholic habits affect the economy of my country! Good luck with your classes if you are taking any!

June 12, 2007

Been a While

I am back at Berkeley after an amazing four weeks at home. I really did not want to go back at the end of it and i am still kind of bitter at my past self for screwing with my summer by deciding to take me to summer class. Even though that past self really wanted to help my future by taking a couple classes and keep me from rotting my brain. But really what else is summer for but fun fun fun?

I am taking a full plate here at Berkeley. I am taking Chinese 1, which is a combination of Chinese 1A and 1B. Brutal set of courses. As we speak I am repeating line after line of chinese characters. I doubt I will get an A in the class. I am honestly freaked out.

And as if my life could not get any harder, I piled on Math 54 and summer URAP research on with that too. Sigh. Woe is me.

I am going to try and keep my lives up with y'all. After all, you read me before, I bet y'all are really interested in what I have been doing right?

Day1: Character writing, pronounciation repeating, chinese
Day2: rinse and repeat
Day3: rinse and repeat

Oh don't worry there are more interesting things around that I am sure will make for wonderful bloggerfluff.

Jonathan ... signing out. May the Fours be with you.

Termites and Toxicology

We're getting our house exterminated. What's awesome is that I actually know what they're talking about. The pesticides, fumigants, sprays, etc. I know what they're talking about! It's awesome. =) I know the dangers, application, usage, mechanism of action, and toxicity of each chemical. yay!

You just left. Why are you back here?

That's a common response I got yesterday when I went to visit my old high school. Even though I graduated two years ago, I wanted to go back and see some of the teachers, as well as some of the students that I know. It's always refreshing to go back and see familiar faces again; it reminds me that things haven't changed as much as I think.

I will say that I have no idea how I was able to wake up at 6:15 AM every morning to make it to class on time. Since coming to Cal, where classes before 10 AM are considered early, my sleep patterns have become decidedly lax. Somehow, I was able to drag myself out of bed and make it to school.

I went around to different classrooms, saying my greetings to different teachers. To their credit, nearly all of them were pleased to see me. Even my thorny philosophy teacher, Mr. Linn, was relatively congenial, chatting about what he was teaching. My calculus teacher, Mr. McGrath, pulled me into the class and made a 5 minute speech about how I did so well and that he was so proud of me and considers me to be a hero. Quite the flatterer, Mr. McGrath is, but I knew that he was speaking with sincerity.

I also got quite a few hellos from current students (including a bear hug by fellow swimmer Nadine). It was good to see the seniors who will be graduating, especially the students that I tutored when they were tutors. I didn't get to tell them, but I am very proud that they are graduating. I should have told them.

For those of you entering college, don't forget your high school. I know some of you may think "Screw high school! I wasted 4 years of my life in this place; why would I want to go back??", but it is good to go back and visit. While your high school experience may not have been great (and in actual fact, my experience could have been a lot better), it is still worthwhile to pay your respects to your teachers and say hello to friends.

Back to work - wait, I never had a break!

Seems like when you leave the country for a couple of weeks, people assume that you spent your time on vacation. They expect you to return all rested and happy. Well, that's not so much the case. Especially when you go to Europe for research. Jetlag is no fun, either. So what do you do when people say, "Welcome home, now get to work!" I haven't figured it out yet. I just kind of mutter, "I never stopped working in the first place."

It's been non-stop since returning from the weeks at various European herbaria. I arrived home, spent a day with my family, drove back to Berkeley, threw my bags in my room, and made it to work at Starbucks - just in time for a 4pm shift. Closed the store, ran home on my own two feet, fell soundly to sleep, and woke up in time for the 8am class Monday morning. Except I didn't know what room it was in - so I showed up at the wrong place, found someone who knew what room it was in. They failed to mention the building so I wandered the wrong building for a half hour, then showed up late at the proper room. Learned the first few steps for making microscope slides. Went home at 6:30pm. I had 20 minutes for lunch in there somewhere, in between paraffin steps and not at a usual time at all.

People at the Co-Op seemed to think that I was just back from a wonderful vacation. They wanted to hear about all the places I saw in Europe. When I explained that they all looked about the same - shelves or cabinets with dried, old plant samples on acid-free paper - they figured out that I just wanted a bit of a break.

In a way, last week was a break. Microscopy is fun, and I realized that I was actually decent at it. On top of the fun I was having with the course, I wasn't running to Starbucks every evening to help with the close. Class got out too late to work a normal shift, so I just spent more time making perfect slides, then coming home to eat dinner, crash, and maybe watch people play a game of poker before sleeping. Saturday I was supposed to have the day off, but I made a horrible decision and took someone's morning shift at work. An eight-hour shift starting at 5:15am is not the best way to end a stressful week of slide-making. I slept all day Sunday, when I wasn't walking a love-able dog named Otis, who I happened to be pet-sitting. So, Sunday was my break, until I went to work at 4pm, that is.

This week I'm spending time in the Specht lab, learning new skills. Yesterday I spent my time extracting DNA from some Cheilanthoid ferns, the start of my SPUR project for the summer. I don't work at Starbucks again until Wednesday - thank goodness. Working while going to school is a rush. Unless you're crazy like me, I don't recommend it.

June 7, 2007

CalSO!!

Wow, so talk about a lot of information in one day. I definately enjoyed the day and all of the counselors and major advisors were nice. Some recommendations for those who haven't gone yet:
1. Don't wear red.
2. LOOK at the classes that sound interesting and write them down, you will have time to look them up but you have to share a computer and it can get busy/stressful.
3. If you're from So Cal, get used to being the minority/pun of jokes, it's all in good fun though.
4. Drink some sort of coffee in the morning...it's a L O N G day with tons of information!
5. I don't think the campus tour they gave you in your spare time was that helpful, it was really short, and time could be spent better like getting your school id.

And of course have an amazing time! It definately made me more nervous and excited about starting in the fall. It helped that everyone was so supportive of the transfer students (thats me!).

Rent Quest and UCB vs. UND Round 2

The search for another non-crappy, non-slummy, sunny, amazing apartment continues and things are looking good for our heroes! It's as if some mighty god of craigslist finally saw fit for there to be more than a scant few apartment listings posted each day.

While Jason and I scramble around to extricate ourselves from a less than amazing roommate my brother Eriq has been globe trotting! Points to anyone who can guess where these pictures are from!


EricTank.jpg

mig%2019.jpg

photo.jpg

plane.jpg

subway.jpg

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where.jpg

June 6, 2007

Calso

It's summer now. I think some of the incoming freshmen have gone to Calso by now. That's the orientation for incoming frosh. You get to learn about options you have at Berkeley, gain friendships, and register for classes.

REGISTER FOR CLASSES
yes. that scary thingymabob.
So I hope that you've registered for the earliest possible date.
Berkeley's a large school. You're trying to get the best possible schedule that enables you to get the most sleep, best grade, or best social life (choose two of the three). Since incomings cannot register for courses until they come to Calso, having the earliest Calso gives you a lift-up.

Good luck with class registrations!

GO BEARS!

June 5, 2007

Reagan Presidential Library

My parents and I went to the Reagan Presidential Library today. Both of my parents were off work, so we decided to have some quality time together. My brother unfortunately was still at school.

The library is perched on a hill that overlooks a gorgeous vista of shrub covered hills and suburban homes. The grounds are well-kept, clean, ordered. The library itself was built with elegance and simplicity in mind. It was a nice place.

I had a good time, surprisingly. One hears "presidential library," and the mind gears for tedium and vapidness. But the presentation of Reagan's life was rather interesting. After all, this is a man who was for a time responsible for one of the most influential nations on this planet. He grew from humble origins to movie actor to President of the United States. He was one of the key figures in the Cold War. Certainly a very interesting figure.

I especially enjoyed the Air Force One pavilion, which housed one of these immediately recognizable aircraft (it's obviously no longer in use, probably because it's half the size of the current Air Force One).

Also, here's a drink that I found at the "Ronald Reagan Pub"
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"Get hammered & sickled." Indeed.

June 3, 2007

Summer languor

Summertime sure is relaxing. No classes to go to, no homework to do, no finals to study for. I've been on summer break for about 2 weeks now, but it feels almost like it's been longer. No academic obligations...ah...

I noticed that I've been getting a lot of sleep these days. I would go to sleep around 12, and wake up at 10. That's 10 hours of sleep! During the school year I would function well with only 7 hours. I wonder why I'm getting so much now? My dad said that it's because I'm back home and don't have many worries, so I've been able to sleep longer. I wish I didn't, though; I've actually felt more sleepy now than I did during school.

In any case, I'm trying to find ways to put my summer time to good use. I especially want to exercise more. Got to go out and run!

June 1, 2007

Home at last.

There's something about coming home from Berkeley. There is this feeling of familiarity and safety yet there is also this strange creeping feeling of change. The first time I came home, it was like i was seeing everything for the first time. It was different and weird but it is always good to be home. On my way home last week I stopped by UCLA to stay with my best friend Jalees and my favorite neighbor SteveKim. You know I never thought that I would stay so close with friends from high school but amazingly enough, I think college has brought us closer together. I guess absence really does make the heart grow fonder hehe. Jalees especially, because I call the fool all the time and rely on him to keep me stable. While at UCLA, I picked up my mom's transcripts for her new nurse practitioner job and it got me thinking to where I will be in a few years and if I will be coming back to Cal and CNR to pick up my official transcripts when I get a job :) !

I love being home because I get to watch my basketball superstar of a sister do her thing on the court, be humbled by my brother's faith and willingness to give of himself, be spoiled by my parents, see and play with my bulldog, and enjoy the company of my friends, my second family.

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best of all No School!
oh yes, and all quarter system UCs still have finals! ha! take that UCLA! hahaha

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