The 5.8S nuclear ribosomal RNA gene sequence alignment
may be viewed in its entirety in Nexus format (
below), or
may be downloaded as a PAUP format file: "
5.8Ssequences ".

Address questions regarding conditions of use to dvogler@california.com


[FILE NAME: "5.8Ssequences"; CITED IN Cullings and Vogler, (1998), A 5.8S nuclear ribosomal RNA gene sequence database: applications to ecology and evolution, Molecular Ecology (in press).]   [USE SUBJECT TO PERMISSION OF THE AUTHORS.]

#NEXUS

[Description of Taxa:
 
Cronar.coleo      Cronartium coleosporioides (SPC-21)       L76513            Basidiomycota/Urediniomycetes/Uredinales/Cronartiaceae
Melamp.epitea     Melampsora epitea                         S.B.Clark         Basidiomycota/Urediniomycetes/Uredinales/Melampsoraceae
Melamp.lini       Melampsora lini                           S.B.Clark         Basidiomycota/Urediniomycetes/Uredinales/Melampsoraceae
Pucciniastrum     Pucciniastrum goeppertianum (PgW-1)       L76508            Basidiomycota/Urediniomycetes/Uredinales/Pucciniastraceae
Chrysomyxa        Chrysomyxa arctostaphyli (CharPe-1)       L76488            Basidiomycota/Urediniomycetes/Uredinales/Chrysomyxaceae
Pucc.striiform    Puccinia striiformis                      L08735            Basidiomycota/Urediniomycetes/Uredinales/Pucciniaceae
Pucc.sorghi       Puccinia sorghi                           L08734            Basidiomycota/Urediniomycetes/Uredinales/Pucciniaceae
Uromyces          Uromyces scillarum                        L08733            Basidiomycota/Urediniomycetes/Uredinales/Pucciniaceae
Septobasidium     Septobasidium carestianum (SeCa-1)        D.R.Vogler        Basidiomycota/Septobasidiales/Septobasidiaceae
Rhizopogon        Rhizopogon subcaerulescens                M91613            Basidiomycota/Hymenomycetes/Agaricales/Boletaceae
Suil.sinuspaul    Suillus sinuspaulianus                    L54078            Basidiomycota/Hymenomycetes/Agaricales/Boletaceae
Suil.cavipes      Suillus cavipes                           L54119            Basidiomycota/Hymenomycetes/Agaricales/Boletaceae
C.vinicolor       Chroogomphus vinicolor                    L54095            Basidiomycota/Hymenomycetes/Agaricales/Gomphidiaceae
G.glutinosus      Gomphidius glutinosus                     L54114            Basidiomycota/Hymenomycetes/Agaricales/Gomphidiaceae
T.citrina         Truncocolumella citrina                   L54097            Basidiomycota/Hymenomycetes/Agaricales/Rhizopogonaceae
Tricho.matsu      Tricholoma matsutake                      U62964            Basidiomycota/Hymenomycetes/Agaricales/Tricholomataceae
Amanita.musc      Amanita muscaria                          Z54294            Basidiomycota/Hymenomycetes/Agaricales/Amanitaceae
Unk.basidio       Unknown basidiomycete on bamboo           U65662            Basidiomycota/unknown affiliation
Megacollybia      Megacollybia platyphylla (?)              J.Worrall         Basidiomycota
Agaric.bispor     Agaricus bisporus                         A.Brooks          Basidiomycota
Cryptococ.neof    Cryptococcus neoformans                   L14067            Basidiomycota/Filobasidiales
Johns.lab.rat     Unknown basidiomycete                     J.Dempcy          Basidiomycete (?) amplified from a Phacelia sp.
Ascosphaera.ap    Ascosphaera apis                          U18362            Ascomycota/Plectomycetes/Ascosphaerales/Ascosphaeraceae
B.bassiana        Beauveria bassiana                        Z47354            Ascomycota/mitosporic Ascomycotina
Hypoc.schwei      Hypocrea schweinitzii                     X93957            Ascomycota/Pyrenomycetes/Hypocreales/Hypocreaceae
Claviceps.pur     Claviceps purpurea                        U57669            Ascomycota/Pyrenomycetes/Hypocreales/Clavicipitaceae
Cerato.dougl      Ceratocystis douglasii                    U75626            Ascomycota/Pyrenomycetes/Microascales/Microascaceae
Chalara.aust      Chalara australis                         U75629            Ascomycota/mitosporic Ascomycota
Ophios.ulmi       Ophiostoma ulmi                           U23424            Ascomycota/Pyrenomycetes/Ophiostomatales/Ophiostomataceae
F.subglutinans    Fusarium subglutinans                     X93907            Ascomycota/Pyrenomycetes/Hypocreales/mitosporic Hypocreaceae
Gaeuman.cylin     Gaeumannomyces cylindrosporus             U17211            Ascomycota/Pyrenomycetes/Diaporthales/Valsaceae
L.maculans        Leptosphaeria maculans                    M96663            Ascomycota/Loculoascomycetes/Loculoedaphomycetidae/Pleosporales/Phaeosphaeriaceae
Penicill.marne    Penicillium marneffei                     L37406            Ascomycota/Plectomycetes/Eurotiales/Trichocomaceae
Eupenicill.jav    Eupenicillium javanicum                   U18358            Ascomycota/Plectomycetes/Eurotiales/Trichocomaceae
Phial.gramin      Phialophora graminicola                   U17218            Ascomycota/Chaetothyriales/mitosporic Chaetothyriales
Phoma.wasabiae    Phoma wasabiae                            L38711            Deuteromycota/Coelomycetes/Sphaeropsidales/Phomaceae
Scler.sclerot     Sclerotinia sclerotiorum                  M96382            Ascomycota/Discomycetes/Helotiales/Sclerotiniaceae
Morchella.con     Morchella conica                          U51852            Ascomycota/Discomycetes/Pezizales/Morchellaceae
Morchella.esc     Morchella esculenta                       U51851            Ascomycota/Discomycetes/Pezizales/Morchellaceae
Rutstroe.firm     Rutstroemia firma                         Z80893            Ascomycota/Discomycetes/Leotiales/Sclerotiniaceae
Gremmen.abiet     Gremmeniella abietina                     U72259            Ascomycota/Discomycetes/Leotiales/Leotiaceae
Uncinula.adun     Uncinula adunca                           D84383            Ascomycota/Erysiphales/Erysiphaceae
Sphaero.cucur     Sphaerotheca cucurbitae                   D84377            Ascomycota/Erysiphales/Erysiphaceae
Phyllac.moric     Phyllactinia moricola                     D84384            Ascomycota/Erysiphales/Erysiphaceae
Pleoch.shirai     Pleochaeta shiraiana                      D84380            Ascomycota/Erysiphales/Erysiphaceae
Drechsler.aven    Drechlera avenae                          X78123            Ascomycota/Loculoascomycetes/Dothideales/Pleosporaceae/mitosporic Pleosporaceae
Bipolaris.oryz    Bipolaris oryzae                          X78122            Ascomycota/Loculoascomycetes/Dothideales//Pleosporaceae/mitosporic Pleosporaceae
Nect.vilior       Nectria vilior                            U57673            Ascomycota/Pyrenomycetes/Hypocreales/Hypocreaceae
Neocos.vasin      Neocosma vasinfecta                       L36627            Ascomycota/Pyrenomycetes/Hypocreales/Hypocreaceae
Colleto.acuta     Colletotrichum acutatum                   X73810            Ascomycota/Pyrenomycetes/Phyllacorales/Phyllachoraceae
Glomerel.cing     Glomerella cingulata                      X73811            Ascomycota/Pyrenomycetes/Phyllachorales/Phyllachoraceae
Tricho.reesei     Trichoderma reesei                        X77579            Ascomycota/Pyrenomycetes/Hypocreales/Hypocreaceae
Acrem.strictum    Acremonium strictum                       U57671            Ascomycota/Pyrenomycetes/mitosporic Pyrenomycetes
Acrem.chrysog     Acremonium chrysogenum                    U57672            Ascomycota/Pyrenomycetes/mitosporic Pyrenomycetes
Alter.altern      Alternaria alternata                      X17454            Ascomycota/Loculoascomycetes/mitosporic Loculoascomycetes
Neurospora        Neurospora crassa                         M10692            Ascomycota/Pyrenomycetes/Sordariales/Sordariaceae.
Monascus.purp     Monoascus purpureus                       U18356            Ascomycota/Plectomycetes/Eurotiales/Monoascaceae
Asperg.ustus      Aspergillus ustus                         L76744            Ascomycota/Plectomycetes/Eurotiales/Trichocomaceae/mitosporic Trichocomaceae
Asperg.niger      Aspergillus niger                         L76748            Ascomycota/Plectomycetes/Eurotiales/Trichocomaceae/mitosporic Trichocomaceae
Candida.stell     Candida stellatoidea                      L47114            Ascomycota/Hemiascomycetes/Saccharomycetales/Saccharomycetaceae/mitosporic Saccharomycetaceae
Candida.albic     Candida albicans                          L07796            Ascomycota/Hemiascomycetes/Saccharomycetales/Candidaceae
Saccharomyces     Saccharomyces cerevisiae                  K04018            Ascomycota/Hemiascomycetes/Endomycetales/Saccharomycetaceae
Holleya.sinec     Holleya sinecauda                         U51435            Ascomycota/Hemiascomycetes/Saccharomycetales/Saccharomycetaceae
Kluyv.aestuar     Kluyveromyces aestuarii                   U09324            Ascomycota/Hemiascomycetes/Saccharomycetales/Saccharomycetaceae
Eremo.ashbyi      Eremothecium ashbyi                       U09323            Ascomycota/Hemiascomycetes/Saccharomycetales/Eremotheciaceae
Ashbya.gossy      Ashbya gossypii                           U09322            Ascomycota/Hemiascomycetes/Saccharomycetales/Eremotheciaceae
Nemato.coryl      Nematospora coryli                        U09326            Ascomycota/Hemiascomycetes/Saccharomycetales/Eremotheciaceae
Thermo.lanug      Thermomyces lanuginosis                   M10392            Deuteromycota
YelBurnBS1-12     Yellowstone NP 8y burn mycorr. tip        W.Stoll           Ascomycete?
Glomus.dimorph    Glomus dimorphicum                        X96841            Zygomycota/Zygomycetes/Glomales/Glomaceae
Glomus.moessae    Glomus moessae                            U49264            Zygomycota/Zygomycetes/Glomales/Glomaceae
Glomus.coronat    Glomus coronata                           X96846            Zygomycota/Zygomycetes/Glomales/Glomaceae
Brassica.napus    Brassica napus                            D10840            Magnoliophyta/Magnoliopsida/Dilleniidae/Capparales/Brassicaseae
Phaseolus.vulg    Phaseolus vulgaris                        Z48779            Magnoliophyta/Magnoliopsida/Rutanae/Sapindales/Fabaceae/Faboideae
Rhodo.occid       Rhododendron occidentali                  X97431            Magnoliophyta/Magnoliopsida/Dilleniidae/Ericales/Ericaceae
Daboecia.cant     Daboecia cantabrica                       X97430            Magnoliophyta/Magnoliopsida/Theanae/Ericales/Ericaceae
Arcto.uva-ursi    Arctostaphylos uva-ursi                   S.Markos          Ericaceae
Taxus.baccata     Taxus baccata                             X93991            Pinophyta/Coniferales/Taxaceae
Isoetes           Isoetes histrix                           X91871            Thallobionta/Lycopodiophyta/Isoetopsida/Isoetales/Isoetaceae
Selaginella       Selaginella denticulata                   X91873            Embryobionta/Pteridophyta/Lycopodiatae/Selaginellales
Marsilea.quad     Marsilea quadrifolia                      X15139            Embryophyta/Filicophyta/Filicopsida/Marsileales/Marsileaceae
Osmunda.regal     Osmunda regalis                           X63199            Embryophyta/Filicophyta/Filicopsida/Filicales/Osmundaceae
Pinus.conto       Pinus contorta                            U23956            Pinophyta/Coniferales/Pinaceae
Picea.mexicana    Picea mexicana                            U24251            Pinophyta/Coniferopsida/Coniferales/Pinaceae
Gossypium.hirs    Gossypium hirsutum                        U12719            Magnoliophyta/Magnoliopsida/Dilleniidae/Malvales/Malvaceae
Oryza.sativa      Oryza sativa                              M16845            Magnoliophyta/Liliopsida/Commelinidae/Cyperales/Poaceae
Polem.pulch       Polemonium pulcherrimum                   I.deGeofroy       Polemoniaceae
Polem.brand       Polemonium brandegei                      I.deGeofroy       Polemoniaceae
Lupinus.lut       Lupinus luteus                            X16805            Magnoliophyta/Magnoliopsida/Rosidae/Fabales/Fabaceae
Vicia.faba        Vicia faba                                M10471            Magnoliophyta/Magnoliopsida/Rosidae/Fabales/Fabaceae
Phacelia.hydro    Phacelia hydrophylloides                  J.Dempcy          Hydrophyllaceae
Phacelia.proc     Phacelia procera                          J.Dempcy          Hydrophyllaceae
Triticum.aest     Triticum aestivum                         M10758            Magnoliophyta/Liliopsida/Commelinidae/Cyperales/Poaceae
Avena.longigl     Avena longiglumis                         Z11758            Magnoliophyta/Liliopsida/Commelinidae/Poales/Poaceae
Bromus.inermis    Bromus inermis                            L11579            Magnoliophyta/Liliopsida/Commelinidae/Cyperales/Poaceae
Eucorethra.und    Eucorethra underwoodi                     U07981            Arthropoda/Tracheata/Insecta/Pterygota/Diptera/Chaboridae/Eucorethra
Bombyx.mori       Bombyx mori                               X01525            Arthropoda/Tracheata/Insecta/Pterygota/Neoptera/Holometabola/Lepidoptera/Ditrysia/Bombycoidea/Bombycidae
Ixodes.dammin     Ixodes dammini                            L22272            Arthropoda/Chelicerata/Arachnida/Acari/Parasitiformes/Ixodida/Ixodoidea/Ixodidae
Dolichosaccus     Dolichosaccus symmetrus                   L01631            Animalia/Eumetazoa/Platyhelminthes/Trematoda/Digenea/Plagiorchiidae
Homo.sapiens      Homo sapiens                              J01866            Metazoa/Chordata/Vertebrata/Eutheria/Primates/Catarrhini/Hominidae
Rattus.norveg     Rattus norvegicus                         V01270            Chordata/Vertebrata/Eutheria/Rodentia/Sciurognathi/Myomorpha/Muridae/Murinae
Xenopus.laev.     Xenopus laevus                            K01369            Chordata/Vertebrata/Amphibia/Lissamphibia/Anura/Archeobatrachia/Pipoidea/Pipidae/Xenopodinae
Salmo.gaird       Salmo gairdneri (brown trout)             J01860            Chordata/Vertebrata/Osteichthyes/Actinopterygii/Salmoniformes/Salmonoidei/Salmonidae
Anopheles.alb     Anopheles albimanus                       L78065            Arthropoda/Tracheata/Insecta/Pterygota/Diptera/Nematocera/Culicoidea/Culicidae
Anopheles.gam     Anopheles gambiae                         X67157            Arthropoda/Tracheata/Insecta/Pterygota/Neoptera/Holometabola/Diptera/Nematocera/Culicidae
Culex.tritaen.    Culex tritaeniorhynchus                   U33042            Arthropoda/Tracheata/Insecta/Pterygota/Diptera/Nematocera/Culicoidea/Culicidae
D.melanogaster    Drosophila melanogaster                   J01121            Arthropoda/Uniramia/Insecta/Pterygota/Neoptera/Holometabola/Diptera/Brachycera/Cyclorrhapha/Schizophora/Drosophiloidea/Drosophilidae
D.yakuba          Drosophila yakuba                         Z28416            Arthropoda/Tracheata/Insecta/Pterygota/Neoptera/Holometabola/Diptera/Brachycera/Cyclorrhapha/Drosophilidae
Aedes.aegypti     Aedes aegypti                             M95126            Arthropoda/Uniramia/Insecta/Pterygota/Neoptera/Holometabola/Diptera/Nematocera/Culicoidea/Culicidae
Saccostrea.com    Saccostrea commercialis                   L28702            Mollusca/Bivalvia/Pteriomorphia/Eupteriomorphia/Ostreoida/Ostreina/Ostreacea/Ostreidae
Arion.rufus       Arion rufus                               X00131            Bilateria/Coelomata/Protostomia/Mollusca/Gastropoda/Pulmonata/Stylommatophora/Arionidae/Arioninae]
 
begin data;
 
	dimensions ntax=111 nchar=172;
	format gap=- missing=? equate= "N=- R=- W=- M=- ?=-" datatype=dna;
 
	matrix

Cronar.coleo    TAACTTTTAACAATGGATC-TCTTGGCTCTCACATCGATGAAGAACACAGT--GAAATGT-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCAAATCTTTGAACGCACCTTGCA-CC----TT--TTGG-TATTCC-AAAAGGTACACCTGTTTGAGTGTCATGA
Melamp.epitea   TAACTTTCAGCAATGGATC-TCTAGGCTCTCACGTCGATGAAGAACACAGT--GAAATGT-GATACGTAATGTGAATTGCATAATT-CAGTGAATCATCGAATCTTTGAACGCACCTTGCA-CC----TT--TTGGTTATTCC-GAAAGGTACGCCTGTTTGAATGTCACAA
Melamp.lini     TAACTTTCAGCAATGGATC-TCTAGGCTCTCACGTCGATGAAGAACACAGT--GAAATGT-GATACGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACCTTGCA-CC----TT--TTGGTTATTCC-GAGAGGTACACCTGTTTGAATGTCACGA
Pucciniastrum   TAACTTTTAACAATGGATC-TCTTGGCTCTCACATCGATGAAGAACACAGT--GAAATGT-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACCTTGCA-CC----TT--TTGG-TACTCC-AAAAGGTACACCTGTTTGAGTGTCATGA
Chrysomyxa      TAACTTTTAACAATGGATC-TCTTGGCTCTCACATCGATGAAGAACACAGT--GAAATGT-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCAAATCTTTGAACGCACCTTGCA-CC----TT--TTGGATATTCC-GAAAG-TACACCTGTTTGAGTGTCATGA
Pucc.striiform  TAACTTTTAACAATGGATC-TCTAGGCTCTCACATCGATGAAGAACACAGT--GAAATGT-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACCTTGCG-CC----TT--TTGG-TATTCC-AAAAGGCACACCTGTTTGAGTGTCATGA
Pucc.sorghi     TAACTTTTAACAATGGATC-TCTAGGCTCTCACATCGATGAAGAACACAGT--GAAATGT-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCATCTTGCG-CC----TT--TTGG-TATTCC-AAAAGGCACACCTGTTTGAGTGTCATGA
Uromyces        TAACTTTTAACAATGGATC-TCTAGGCTCTCACATCGATGAAGAACACAGT--GAAATGT-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATTGAATCTTTGAACGCATCTTGCG-CC----TT--TTGG-TATTCC-AAAAGGCACACCTGTTTGAGTGTCATGA
Septobasidium   AAACTTTCAACAACGGATC-TCTTGGTTCTCGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACCTTGCA-CC----TC--TTGG-TATTCC-GAGAGGTACATCTGTTTGAGTGTCATGA
Rhizopogon      CAACTTTCAGCAACGGATC-TCTTGGCTCTCGCATCGATGAAGAACGCAGC--GAAAAGC-GATATGTAATGTGAATTGCAGATCTACAGTGAATCATCGAATCTTTGAACGCACCTTGCG-CT----CC--TCGG-TGTTCC-GAGGAGCATGCCTGTTTGAGTGTCAGTA
Suil.sinuspaul  CAACTTTCAGCAATGGATC-TCTTGGCTCTCGCATCGATGAAGAACGCAGC--GAATCGC-GATATGTAATGTGAATTGCAGATCTACAGTGAATCATCGAATCTTTGAACGCACCTTGCG-CT----TC--TCGG-TGTTCC-GAGGAGCATGCCTGTTTGAGTGTCAGTA
Suil.cavipes    CAACTTTCAGCAATGGATC-TCTTGGCTCTCGCATCGATGAAGAACGCAGC--GAATCGC-GATATGTAATGTGAATTGCAGATCTACAGTGAATCATCGAATCTTTGAACGCACCTTGCG-CT----CC--TCGG-TGTTCC-GAGGAGCATGCCTGTTTGAGTGTCAGTA
C.vinicolor     CAACTTTCAGCAATGGATC-TCTTGGCTCTCGCATCGATGAAGAACGCAGC--GAATTGC-GATATGTAATGTGAATTGCAGATCTACAGTGAATCATCGAATCTTTGAACGCACATTGCG-CT----CC--TCGG-TGTTCC-GAGGAGCATGCCTGTTTGAGTGTCAGTA
G.glutinosus    CAACTTTCAGCAATGGATC-TCTTGGCTCTCGCATCGATGAAGAACGCAGC--GAATTGC-GATATGTAATGTGAATTGCAGATCTACAGTGAATCATCGAATCTTTGAACGCACATTGCG-CT----CC--TCGG-TGTTCC-GAGGAGCATGCCTGTTTGAGTGTCAGTA
T.citrina       CAACTTTCAGCAATGGATC-TCTTGGCTCTCGCATCGATGAAGAACGCAGC--GAATCGC-GATATGTAATGTGAATTGCAGATCTACAGTGAATCATCGAATCTTTGAACGCACCTTGCG-CT----CC--TCGG-TGTTCC-GAGGAGCATGCCTGTTTGAGCGTCAGTA
Tricho.matsu    CAACTTTCAACAACGGATC-TCTTGGCTCTCGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACCTTGCG-CT----CC--TTGG-TATTCC-GAGGAGCATGCCTGTTTGAGTGTCATGA
Amanita.musc    CAACTTTCAACAACGGATC-TCTTGGCTCTCGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGANTCTTNGANCGCACNTTGGC-CT----CC--TTGG-TATTCC-GAGGAGCATGCCTGTTTGAGTGTCATTA	
Unk.basidio     CAACTTTCAACAACGGATC-TCTTGGCTCTCGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACCTTGCA-CT----CC--TTGG-TATTCC-GAGGAGTATGCCTGTTTGAGTGTCATGA
Megacollybia    CAACTTTCAGCAACGGATC-TCTTGGCTCTCGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACCTTGCA-CT----CC--TTGGGTATTCC-GAGGAGTATGCCTGTTTGAGTGTCATTA
Agaric.bispor   CAACTTTCAGCAACGGATC-TCTTGGCTCTCGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCATCTTGCG-CT----CC--TTGG-TATTCC-GAGGAGCATGCCTGTTTGAGTGTCATTA
Cryptococ.neof  AAACTTTCAACAACGGATC-TCTTGGCTTCCACATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAGTCTTTGAACGCAACTTGCG-CC----CT--TTGG-TATTCC-GAAGGGCATGCCTGTTTGAGAGTCATGA
Johns.lab.rat   ????????????????????????????????????????????????????????????????????????????TTGCAGAATT-CAGTGAATCATCGAGTCTTTGAACGCACCTTGCG-CC----CT--TTGG-TATTCC-GAAGG-CATGCCTGTTTGAGTGTCAGTA
Ascosphaera.ap  AAACTTTCAACAACGGATC-TCTTGGTTCCGACATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-CCGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CT--CTGG-TATTCC-GGGGGGCATGCCTGTCCGAGCGTCATTG
B.bassiana      AAACTTTCAACAACGGATCGTCTTGGCTCTGGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATC-CAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CG--CCAG-CATTCT-GGCGGGCATGCCTGTTCGAGCGTCATTT
Hypoc.schwei    AAACTTTCAACAACGGATC-TCTTGGTTCTGGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CG--CCAG-TATTCT-GGCGGGCATGCCTGTCCGAGCGTCATTT
Claviceps.pur   AAACTTTCAACAACGGATC-TCTTGGTTCTGGCATCGATGAAGAACGCAGC--GAAATGC-GATACGTAATGTGAATTGCAGACTT-CAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CG--CCAG-TATTCT-GGCGGGCATGCCTGTTCGAGCGTCATTT
Cerato.dougl    AAACTTTCAACAACGGATC-TCTTGGCTCTAGCATCGATGAAGAACGCAGC--GAAATGC-GATACGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----TG--GCAG-TATTCT-GCCAGGCATGCCTGTCCGAGCGTCATTT
Chalara.aust    AAACTTTCAACAACGGATC-TCTTGGCTCTAGCATCGATGAAGAACGCAGC--GAAATGC-GATACGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----TG--GCAG-TATTCT-GCCAGGCATGCCTGTCCGAGCGTCATTT
Ophios.ulmi     AAACTTTCAACAACGGATC-TCTTGGCTCTGGCATCGATGAAGAACGCAGC--AAAATGC-GATACGTAATGCGAATTGCAGAATT-CAG-GAGTCATCGAATCTTTGAACGCACATTGGG-CC----CG--CCAG-TATTCT-GGCGGGCATGCCTGTCCGAGCGTCATTT
F.subglutinans  AAACTTTCAACAACGGATC-TCTTGGTTCTGGCATCGATGAAGAACGCAGC--AAAATGC-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CG--CCAG-TATTCT-GGCGGGCATGCCTGTTCGAGCGTCATTT
Gaeuman.cylin   AAACTTTCAACAACGGATC-TCTTGGTTCTGGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CG--CCGG-TATTCC-GGCGGGCATGCCTGTTCGAGCGTCATTT
L.maculans      CAACTTTCAACAACGGATC-TCTTGGTTCTGGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAGTGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CC--TTGG-TATTCC-ATGGGGCATGCCTGTTCGAGCGTCATTT
Penicill.marne  AAACTTTCAACAATGGATC-TCTTGGTTCCGGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-CCGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CC--CTGG-CATTCC-GGGGGGCATGCCTGTCCGAGCGTCATTT
Eupenicill.jav  AAACTTTCAACAACGGATC-TCTTGGTTCCGGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAGTCTTTGAACGCACATTGCG-CC----CC--CTGG-TATTCC-GGGGGGCATGCCTGTCCGAGCGTCATTG
Phial.gramin    AAACTTTCAACAACGGATC-TCTTGGTTCTGGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CG--CCGG-TATTCC-GGCGGGCATGCCTGTTCGAGCGTCATTT
Phoma.wasabiae  CAACTTTCAACAACGGATC-TCTTGGTTCTGGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAGTGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CC--TTGG-TATTCC-ATGGGGCATGCCTGTTCGAGCGTCATTT
Scler.sclerot   AAACTTTCAACAACGGATC-TCTTGGTTCTGGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CC--TTGG-TATTCC-GGGGGGCATGCCTGTTCGAGCGTCATTT
Morchella.con   AAACTTTCAACAACGGATC-TCTTGGTTCCCACATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CC--CTGG-TATTCC-GGGGGGCATGCCTGTTCGAGCGTCATAA
Morchella.esc   AAACTTTCAACAACGGATC-TCTTGGTTCCCACATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CT--CTGG-TATTCC-GGAGGGCATGCCTGTTCGAGCGTCATAA
Rutstroe.firm   AAACTTTCAACAACGGATC-TCTTGGTTCTGG-ATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CC--TTGG-CATTCC-GGGGGGCATGCCTGTTCGAGCGTCATTT
Gremmen.abiet   AAACTTTCAACAACGGATC-TCTTGGTTCTGGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CC--TTGG-TATTCC-GGGGGGCATGCCTGTTCGAGCGTCATTT
Uncinula.adun   AAACTTTCAACAACGGATC-TCTTGGCTCTGGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-TAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CC--TTGG-CATTCC-GAGGGGCATGCCTGTTCGAGCGTCATAA
Sphaero.cucur   AAACTTTCAACAACGGATC-TCTTGGCTCTGGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-TAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CC--CCGG-CATTCC-GAGGGGCATGCCTGTTCGAGCGTCAGAA
Phyllac.moric   AAACTTTCAACAACGGATC-TCTTGGCTCTGGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATC-TAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CC--TTGG-TATTCC-GAGGGGSATGCCTGTTCGAGCGTCAAAA
Pleoch.shirai   AAACTTTCAACAACGGATC-TCTTGGCTCTGGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-TAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CC--TTGG-CATTCC-GAGGGGCATGCCTGTTCGAGCGTCATAA
Drechsler.aven  CAACTTTCAACAACGGATC-TCTTGGTTCTGGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAGTGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CT--TTGG-TATTCC-AAAGGGCATGCCTGTTCGAGCGTCATTT
Bipolaris.oryz  CAACTTTCAACAACGGATC-TCTTGGTTCTGGCATCGATGAAGAACGCAGC--GAAATGC-GATACGTAGTGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CT--TTGG-TATTCC-AAAGGGCATGCCTGTTCGAGCGTCATTT
Nect.vilior     AAACTTTCAACAACGGATC-TCTTGGTTCTGGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-CCGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CG--CCAG-TATTCT-GGCGGGCATGCCTGTTCGAGCGTCATTT
Neocos.vasin    AAACTTTCAACAACGGATC-TCTTGGCTCTGGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CG--CCAG-TATTCT-GGCGGGCATGCCTGTTCGAGCGTCATTA
Colleto.acuta   AAACTTTTAACAACGGATC-TCTTGGTTCTGGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CG--CCAG-CATTCT-GGCGAGCATGCCTGTTCGAGCGTCATT?
Glomerel.cing   AAACTTTTAACAACGGATC-TCTTGGTTCTGGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CG--CCAG-CATTCCTGGCGGGCATGCCTGTTCGAGCGTCATT?
Tricho.reesei   AAACTTTCAACAACGGATC-TCTTGGTTCTGGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCGTCGAATCTTTGAACGCACATTGCG-CC----CG--CCAG-TATTCT-GGCGGGCATGCCTGTCCGAGCGTCATT?
Acrem.strictum  AAACTTTCAACAACGGATC-TCTTGGCTCTGGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CG--CCGG-CACTCC-GGCGGGCATGCCTGTCCGAGCGTCATTT
Acrem.chrysog   AAACTTTCAGCAACGGATC-TCTTGGCTCTGGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CG--CCAG-CACTCT-GGCGGGCATGCCTGTCCGAGCGTCATTT
Alter.altern    AAACTTTCAACAACGGATC-TCTTGGTTCTGGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAGTGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CT--TTGG-TATTCC-AAAGGGCATGCCTGTTCGAGCGTCATTT
Neurospora      AAACTTTCAACAACGGATC-TCTTGGTTCTGGCATCGATGAAGAACGCAGC--GAAATGC-GATAGGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACATTGCG-CT----CG--CCAG-TATTCT-GGCGAGCATGCCTGTTCGAGCGTCATTT
Monascus.purp   AAACTTTCAACAACGGATC-TCTTGGTTCCGGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CC--CTGG-TATTCC-GGGGGGCATGCCTGTCCGAGCGTCATTA
Asperg.ustus    AAACTTTCAACAATGGATC-TCTTGGTTCCGGCATCGATGAAGAACGCAGC--GAACTGC-GATAAGTAATGTGAATTGCAGAATT-CAGTGAATCATCGAGTCTTTGAACGCACATTGCG-CC----CC--CTGG-CATTCC-GGGGGGCATGCCTGTCCGAGCGTCATTG
Asperg.niger    AAACTTTCAACAATGGATC-TCTTGGTTCCGGCATCGATGAAGAACGCAGC--GAAATGC-GATAACTAATGTGAATTGCAGAATT-CAGTGAATCATCGAGTCTTTGAACGCACATTGCG-CC----CC--CTGG-TATTCC-GGGGGGCATGCCTGTCCGAGCGTCATTG
Candida.stell   AAACTTTCAACAACGGATC-TCTTGGTTCTCGCATCGATGAAGAACGCAGC--GAAATGC-GATACGTAATATGAATTGCAGATAT-TCGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CT--CTGG-TATTCC-GGAGGGCATGCCTGTTTGAGCGTCGTTT
Candida.albic   AAACTTTCAACAACGGATC-TCTTGGTTCTCGCATCGATGAAGAACGCAGC--GAAATGCCGATACGTAATATGAATTGCAGATAT-CCGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CT--CTGG-TATTCC-GGAGGGCATGCCTGTTTGAGCGTCGTTT
Saccharomyces   AAACTTTCAACAACGGATC-TCTTGGTTCTCGCATCGATGAAGAACGCAGC--GAAATGC-GATACGTAATGTGAATTGCAGAATT-CCGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CC--TTGG-TATTCC-AGGGGGCATGCCTGTTTGAGCGTCATTT
Holleya.sinec   AAACTTTCAACAACGGATC-TCTTGGTTCTCGCATCGATGAAGAACGCAGC--GAATTGC-GATAAGTATTGTGAATTGCAGATTT-TCGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CT--CTGG-TATTCC-AGAGGGCATGCCTGTTTGAGCGTCATTT
Kluyv.aestuar   AAACTTTCAACAACGGATC-TCTTGGTTCTCGCATCGATGAAGAACGCAGC--GAATTGC-GATAAGTATTGTGAATTGCAGATTT-TCGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CT--TTGG-TATTCC-AGGGGGCATGCCTGTTTGAGCGTCATTT
Eremo.ashbyi    AAACTTTCAACAACGGATC-TCTTGGTTCTCGCATCGATGAAGAACGCAGC--GAATTGC-GATAAGTATTGTGAATTGCAGATTT-TCGTGAATCATCGAATCTTTGAACGCACATTGCG-TC----CT--CTGG-TATTCC-AGAGGGCATGCCTGTTTGAGCGTCATTT
Ashbya.gossy    AAACTTTCAACAACGGATC-TCTTGGTTCTCGCATCGATGAAGAACGCAGC--GAATTGC-GATAAGTATTGTGAATTGCAGATTT-TCGTGAATCATCGAATCTTTGAACGCACATTGCG-TC----CT--CTGG-TATTCC-AGGGGGCATGCCTGTTTGAGCGTCATTT
Nemato.coryl    AAACTTTCAACAACGGATC-TCTTGGTTCTCGCATCGATGAAGAACGCAGC--GAATTGC-GATAAGTATTGTGAATTGCAGATTT-TCGTGAATCATCGAATCTTTGAACGCATATTGCG-CC----CA--CTGG-TATTCC-GGTGGGCATGCCTGTTTGAGCGTCATTT
Thermo.lanug    AAACTTTCAACAATGGATC-TCTTGGTTCCGGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAATGTGAATTGCAGAATT-CCGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----CT--CTGG-TATTCC-GGGGGGCATGCCTGTCCGAGCGTCATT?
YelBurnBS1-12   AAACTTTCAACAACGGATC-TCTTGGTTCTCGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAGTGTGAATTGCAGAATT-CAGTGAATCATCGAATCTTTGAACGCACATTGCG-CC----TC--CTGG-TATTCC-GGGAGGCATGCCTGTTCGAGCGTCATTA
Glomus.dimorph  TCACTTTCAACAACGGATC-TCTTGGCTCTCGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAGTGTGAATTGCATAATT-TTGTGAATCATCGAATCTTTGAACGCAAATTGCA-CT----CC--CTGG-TATTCC-GGGGAGTATGCCTGTTTGAGGGTCGTTA
Glomus.moessae  TCACTTTCAACAACGGATC-TCTTGGCTCTCGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAGTGTGAATTGCATAATT-TTGTGAATCATCGAATCTTTGAACGCAAATTGCA-CT----CC--CTGG-TATTCC-GGGGAGTATGCCTGTTTGAGGGTCGTTA
Glomus.coronat  TCACTTTCAACAACGGATC-TCTTGGCTCTCGCATCGATGAAGAACGCAGC--GAAATGC-GATAAGTAGTGTGAATTGCATAATT-TTGTGAATCATCGAATCTTTGAACGCAAATTGCA-CT----CT--CTGG-TATTCC-GGGGAGTATGCCTGTTTGAGGGTCGTTA
Brassica.napus  CGACTCTCGGCAACGGATA-TCTCGGCTCTCACATCGATGAAGAACGTAGC--GAAATGC-GATACTTGGTGTGAATTGCAGAATC-CCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTCTGG-----CC--GAGGGCACGTCTGCCTGGGTGTCACAA
Phaseolus.vulg  TGACTCTCGGCAACGGATA-TCTCGGCTCTTGCATCGATGAAGAACGTAGC--GAAATGC-GATACTTGGTGTGAATTGCAGAATC-CCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCAAAGCCATTAGG-----CC--GAGGGCAAGCCTGCCTGGGTGTCACAC
Rhodo.occid     CGACTCTCGGCAACGGATA-TCTCGGCTCTTGCATCGATGAAGAACGTAGC--GAAATGC-GATACTTGGTGTGAATTGCAGAATC-CCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCTGAAGCCATTAGG-----TT--GAAGGCACGTCTGCCTGGGCGTCACGC
Daboecia.cant   CGACTCTCGGCAACGGATA-TCTCGGCTCTTGCATCGATGAAGAACGTAGC--GAAATGC-GATACTTGGTGTGAATTGCAGAATC-CCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCTGAAGCCATTAGG-----TT--GAAGGCACGTCTGCCTGGGCGTCACGC
Arcto.uva-ursi  CGACTCTCGGCAACGGATA-TCTCGGCTCTTGCATCGATGAAGAACGCAGC--GAAATGC-GATACTTGGTGTGAATTGCAGAATC-CCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCTGAAGCCATTAGG-----TT--GAAGGCACGTCTGCCTGGGCGTCACGC
Taxus.baccata   CGACTCTCGGCAACGGATA-TCTCGGCTCTCGC-ACGATGAAGAACGTAGC--GAAATGC-GATACTTAGTGTGAATTGCAGAATC-CCGTGAATCATCGAGTCTTTGAACGCAAGTTG-GCCCGGAGCT---CGG-----CC--GAGGGCACGTCTGCTTGGGCGTCGCAC
Isoetes         TACGACTCGGCAACGGATA-TCTTGGCTCTTGCCACGATGAAGAACGCAGC--GAAATGC-GATACGTGATGTGAATTGCAGAACT-CCGTGAATCATTGAATCTTTGAACGCAACTTGCGCCCGGGGCT---TGT-----CC--GAGGGCATGTCTGCGTGAGCGTCTAAC
Selaginella     AACGACTCGGCAACGGATA-TCTTGGCTCTTGCAACGATGAAGAACGCAGC--GAAATGT-GATACGTGATGTGAATTGCAGAATT-CCGTGAATCATCAAATGTTTGAACGCAACTTGCGCCCGAGGCT---TGT-----CC--GAGGGCATGCCTGCTTGAGCGTCTGCT
Marsilea.quad   GGACTCTCAGCAACGGATA-TCTTGGCTCTTGCAACGATGAAGAACGCAGC--GAAATGC-GATACGTAATGTGAATTGCAGAATT-CCGCGAATCATCGAATCTTTGAACGCAA-TTG-GCCCGAGGCT---CGT-----CC--GAGGGCACGTCTGCCTGAGCGTC-CAC
Osmunda.regal   CGACTCTCAGCAACGGATA-TCTTGGCTCTTGCAACGATGAAGAACGCAGC--GAAATGC-GATACGTAGTGTGAACTGCAGAATT-CCGCGAATAATCGAGTCTTTGAACGCAAGTTG-GCCCGCGGCT---CGT-----CC--AAGGGCATGCCTGCCTGAGCGTC-CTC
Pinus.conto     CGACTCTCGTCAACGGATA-TCTCGGCTCTTGTTACGATGAAGAACGTANC--GAAATGC-GATACTTAGTGTGAATTGCAGAATC-CCGTGAATCATCGAGTTTTTGAACGCAATTTGCGCCCGAGGCC--TCGG-----TC--GAGGGCACGTCTGTCTGGGCGTCGCAT
Picea.mexicana  TGACTCTCGGCMAMGGAWA-TCTCGGCTCTTGTCAACA-GAAGAACGTAGC--GAWATGC-GATACTTAGTGTGAATTGCAGAATC-CCGTGAATCATCGAGTTTTTGWACGCAATTTGCGCCCGAGRCC--TCGG-----TC--GAGGGCACGTCTGTCTGGGCGTCGCAT
Gossypium.hirs  CGACTCTCGGCAACGGATA-TCTCGGCTCTCGCATCGATGAAGAACGTAGC--GAAATGC-GATACTTGGTGTGAATTGCAGAATC-CCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCATTAGG-----CC--GAGGGCACGTCTGCCTGGGTGTCACGC
Oryza.sativa    CGACTCTCGGCAACGGATA-TCTCGGCTCTCGCATCGATGAAGAACGTAGC--GAAATGC-GATACCTGGTGTGAATTGCAGAATC-CCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCATCCGG-----CC--GAGGGCACGCCTGCCTGGGCGTCACGC
Polem.pulch     CGACTCTCGGCAACGGATA-TCTCGGCTCTCGCATCGATGAAGAACGTAGC--GAAATGC-GATACTTGGTGTGAATTGCAGAATC-CCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCATTAGG-----CC--GAGGGCACGTCTGCCTGGGCGTCTCAC
Polem.brand     CGACTCTCGGCAACGGATA-TCTCGGCTCTCGCATCGATGAAGAACGTAGC--GAAATGC-GATACTTGGTGTGAATTGCAGAATC-CCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCATTAGG-----CC--GAGGGCACGTCTGCCTGGGCGTCTCAC
Lupinus.lut     AGACTCTCGGCAACGGATA-TCTCGGCTCTTGCATCGATGAAGAACGTAGC--GAAATGC-GATACTTGGTGTGAATTGCAGAATC-CCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGG-----CC--GAGGGCACGCCTGCCTGGGTGTTGCAC
Vicia.faba      TGACTCTCGGCAACGGATA-TCTAGGCTCTTGCATCGATGAAGAACGTAGC--GAAATGC-GATACTTGGTGTGAATTGCAGAATC-CCGTGAACCATCGAGTCTTTGAACGCAAGTTGC-CCCGATGCCATTAGG-----TT--GAGGGCACGTCTGCCTGGGTGTCACAT
Phacelia.hydro  CGACTCTCGGCAACGGATA-TCTAGGCTCTCGCATCGATGAAGAACGTAGC--GAAATGC-GATACTTGGTGTGAATTGCAGAATC-CCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCGTTAGG-----TC--GAGGGCACGTCTGCCTGGGCGTCACGC
Phacelia.proc   CGACTCTCGGCAACGGATA-TCTAGGCTCTCGCATCGATGAAGAACGTAGC--GAAATGC-GATACTTGGTGTGAATTGCAGAATC-CCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCAAAGCCGTTAGG-----CC--GAGGGCACGTCTGCCTGGGCGTCACGC
Triticum.aest   CGACTCTCGGCAACGGATA-TCTCGGCTCTCGCATCGATGAAGAACGTAGC--GAAATGC-GATACCTGGTGTGAATTGCAGAATC-CCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCACTCGG-----CC--GAGGGCACGCCTGCCTGGGCGTCACGC
Avena.longigl   CGACTCTCGGCAACGGATA-TCTCGGCTCTCGCATCGATGAAGAACGTAGC--GAAATGC-GATACCTGGTGTGAATTGCAGAATC-CCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCATTCGG-----CC--GAGGGCACGCCTGCCTGGGCGTCACGC
Bromus.inermis  CGACTCTCGGCAACGGATA-TCTCGGCTCTCGCATCGATGAAGAACGTAGC--GAAATGC-GATACCTGGTGTGAATTGCAGAATC-CCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCACTCGG-----TC--GAGGGCACGCCTGCCTGGGCGTCACGC
Eucorethra.und  TTAACCTTGGCAGGGGATC-ACTTGGCTCATGGATCGATGAAGACCGCAGC--AAAATGC-GCGTCATAATGTGAACTGCAGGACACA--TGAA-CACCGATAAGTTGAACGCATATTGCACCT????????????????????????????????????????????????
Bombyx.mori     TTACCCTGGACGGTGGATC-ACTTGGCTCGCGGGTCGATGAAGAACGCAGT--TAACTGC-GCGTCATAGTGTGAACTGCAGGACACATTTGAA-CATCGACATTTCGAACGCACATTGCGGTC????????????????????????????????????????????????
Ixodes.dammin   CGACTCTAAGCGGTGGATC-ACTCGGTTCTCGGGTCGATGAAGAACGCAGC--CAGCTGC-GAGACTTGGTGTGAATTGCAGGACACA-CTGAG-CACTTACTCTTTGAACGCACATTGCGGCC????????????????????????????????????????????????
Dolichosaccus   CAACTCTGAGCGGTGGATC-ACTCGGCTCGTGTGTCGATGAAGAGCGCAGC--CAACTGT-GTGAATTAATGTGAACTGCATACTGC-TTTGAA-CATCGACATCTTGAACGCACATTGCGGCC????????????????????????????????????????????????
Homo.sapiens    CGACTCTTAGCGGTGGATC-ACTCGGCTCGTGCGTCGATGAAGAACGCAGCGCTAGCTGC-GAGAATTAATGTGAATTGCAGGACACAT-TGA-TCATCGACACTTCGAACGCAC-TTGCGGCC????????????????????????????????????????????????
Rattus.norveg   CGACTCTTAGCGGTGGATC-ACTCGGCTCGTGCGTCGATGAAGAACGCAGC--TAGCTGC-GAGAATTAATGTGAATTGCAGGACACAT-TGA-TCATCGACACTTCGAACGCAC-TTGCGGCC????????????????????????????????????????????????
Xenopus.laev.   CGACTCTTAGCGGTGGATC-ACTCGGCTCGTGCGTCGATGAAGAACGCAGC--TAGCTGC-GAGAATTAGTGTGAATTGCAGGACACAT-TGA-TCATCGACACTTCGAACGCACCTTGCGGCC????????????????????????????????????????????????
Salmo           CAACTCTTAGCGGTGGATC-ACTCGGCTCGTGCGTCGATGAAGAACGCAGCGCTAGCTGC-GAGAACTAATGTGAATTGCAGGACACAT-TGA-TCATTGACACTTCGAACGCACTTTGCGGCC????????????????????????????????????????????????
Anopheles.alb   AAACCCTAGGCAGGGGATC-ACTCGGCTCATGGATCGATGAAGACCGCAGC--TAAATGC-GCGTCAGAATGTGAACTGCAGGACACA--TGAA-CACCGACACGTTGAACGA-TATTGCGCAT????????????????????????????????????????????????
Anopheles.gam   AAACCCTAGGCAGGGGATC-ACTCGGCTCATGGATCGATGAAGACCGCAGC--TAAATGC-GCGTCATAATGTGAACTGCAGGACACA--TGAA-CATTGATAAGTTGAACGCATATGGCGCAT????????????????????????????????????????????????
Culex.tritaen.  AAACCCTAGGCAGGGGATC-ACTCGGCTCGTGGATCGATGAAGACCGCAGC--TAAATGC-GCGTCAGAATGTGAACTGCAGGACACA--TGAA-CACCGACAAGTTGAACGCATATTGCACAT????????????????????????????????????????????????
D.melanogaster  AAACTCTATGCGGTGGATC-ACTCGGCTCATGGGTCGATGAAGAACGCAGC--AAACTGT-GCGTCATCGTGTGAACAGCAGGACACA--TGAA-CATCGACATTTTGAACGCATATCGCAGTC????????????????????????????????????????????????
D.yakuba        AAACTCTAAGCGGTGGATC-ACTCGGCTCATGGGTCGATGAAGAACGCAGC--AAACTGT-GCGTCATCGTGTGAACTGCAGGACACA--TGAA-CATCGACATTTTGAACGCATATCGCAGTC????????????????????????????????????????????????
Aedes.aegypti   AAACCCTAGGCAGGGGATC-ACTCGGCTCGTGGATCGATGAAGACCGCAGC--TAAATGC-GCGTCAGAATGTGAACTGCAGGACACA--TGAA-CACCGACACGTTGAACGCATATTGCACAT????????????????????????????????????????????????
Saccostrea.com  CAACTCTAAGTGGTGGATC-ACTCGGCTCGGGGGTCGATGAAGAGCGCAGC--CAGCTGC-GTGAATTAATGTGAATTGCAGGACACAT-TGAAA-G???????????????????????????????????????????????????????????????????????????
Arion.rufus     TAACTTTGTGCGGTGGATC-ACTCGGCTCGTGCGTCGATGAAGAGCGCAGC--CAGCTGC-GTGAATTAATGTGAATTGCAGAACACAT-TGAA-CATCGACATCTTGAACGCATATGGCGGCC????????????????????????????????????????????????
 
;
endblock;
 
begin assumptions;
 
	[weight transversions:transitions 2:1]	
	usertype weight stepmatrix=4 ATGC
	
		. 2 1 2
		2 . 2 1
		1 2 . 2
		2 1 2 .;
 
endblock;