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Publications

Under Consideration

Nusslé, S., Matthews, K.R., and Carlson, S.M. Mediating water temperature increases due to livestock and global change in high elevation meadow streams of the Golden Trout Wilderness.

Cervantes-Yoshida, K., Leidy, R.A., and Carlson, S.M. Contemporary land change alters fish communities in a San Francisco Bay drainage, California, U.S.A.

Huber, E.R. and Carlson, S.M. Temporal trends of California Central Valley fall run Chinook salmon hatchery release practices.

Hwan, J.L. and Carlson, S.M. In Re-review. Contraction of an intermittent stream during seasonal drought: intra- and interannual patterns and biological consequences.

Cervantes-Yoshida, K., Leidy, R.A., and Carlson, S.M. Direct and indirect effects of watershed properties on fish communities: an example from San Francisco Bay streams.

Power, M.E., Bouma-Gregson, K., Higgins, P., and Carlson, S.M. The thirsty Eel: summer and winter flow thresholds that tilt the Eel River of northwestern California from salmon-supporting to cyanobacterially-degraded states.

2014

Bogan, M.T., Hwan, J.L., and Carlson, S.M. 2014. High aquatic biodiversity in an intermittent coastal headwater stream at Golden Gate National Recreation Area, California. Northwest Science, in press.

Satterthwaite, W.H., Carlson, S. M., Allen-Moran, S.D., Vincenzi, S., Bograd, S.J., and Wells, B.K. 2014. Match-mismatch dynamics and the relationship between ocean-entry timing and relative ocean recoveries of Central Valley fall run Chinook salmon. Marine Ecology Progress Series 511: 237-248.

Carlson, S.M., Cunningham, C.J., and Westley, P.A.H. 2014. Evolutionary rescue in a changing world. Trends in Ecology and Evolution 29: 521-530.

Buoro, M. and Carlson, S.M. 2014. Life history syndromes: integrating dispersal through space and time. Ecology Letters 17: 756-767.

2013

Siepielski, A.M., Gotanda, K.M., Morrissey, M.B., Diamond, S.E., DiBattista, J.D., and Carlson, S.M. 2013. The spatial patterns of directional phenotypic selection. Ecology Letters 16: 1382-1392 (PDF).

Resh, V.H., Bêche, L., Lawrence, J., Mazor, R., McElravy, E.P., Purcell, A.P., and Carlson, S.M. 2013. Long-term population and community patterns of benthic macroinvertebrates and fishes in northern California Mediterranean-climate streams. Hydrobiologia 719: 93-118 (PDF).

2012

Moore, J.W., Carlson, S.M., Twardochleb, L., Hwan, J.L., Fox, J.M., Hayes, S.A. 2012. Trophic tangles through time? Opposing direct and indirect effects of an invasive omnivore on stream ecosystem processes. PLoS ONE 7: e50687 (PDF).

Kingsolver, J.G., Diamond, S.E., Siepielski, A.M., and Carlson, S.M. 2012. Synthetic analyses of phenotypic selection in natural populations: lessons, limitations and future directions. Evolutionary Ecology 26: 1101-1118 (PDF).

Moore, J.W., Herbst, D.B., Heady, W., and Carlson, S.M. 2012. Stream community and ecosystem responses to the boom and bust of an invading snail. Biological Invasions 14: 2435-2446 (PDF).

2011

Carlson, S.M., and Satterthwaite, W.H. 2011. Weakened portfolio effect in a collapsed salmon population complex. Canadian Journal of Fisheries and Aquatic Sciences 68: 1579-1589 (PDF).

Leidy, R.A., Cervantes-Yoshida, K., and Carlson, S.M. 2011. Persistence of native fishes in small streams of the urbanized San Francisco Estuary, California: acknowledging the role of urban streams in native fish conservation. Aquatic Conservation: Marine and Freshwater Ecosystems 21: 472-483 (PDF).

Anderson, J.H., Ward, E.J., and Carlson, S.M. 2011. A model for estimating the minimum number of offspring to sample in studies of reproductive success. Journal of Heredity 102: 567-576 (PDF).

Carlson, S.M., Quinn, T.P., and Hendry, A.P. 2011. Eco-evolutionary dynamics in Pacific salmon. Heredity 106: 438-447 (PDF).

Siepielski, A.M., DiBattista, J.D., Evans, J.A., and Carlson, S.M. 2011. Differences in the temporal dynamics of phenotypic selection among fitness components in the wild. Proceedings of the Royal Society B 278: 1572-1580 (PDF).

2010

Darimont, C.T., Bryan, H.M., Carlson, S.M., Hocking, M.D., MacDuffee, M., Paquet, P.C., Price, M.H.H., Reimchen, T.E., Reynolds, J.D., and Wilmers, C.C. 2010. Salmon for terrestrial protected areas. Conservation Letters 3: 379-389. (PDF)

Carlson, S.M., Kottas, A., and Mangel, M. 2010. Bayesian analysis of size-dependent over-winter mortality from size-frequency distributions. Ecology 91: 1016-1024. (PDF)

2009

Siepielski, A.M., DiBattista, J.D., and Carlson, S.M. 2009. It’s about time: the temporal dynamics of phenotypic selection in the wild. Ecology Letters 12: 1261-1276. (PDF)

Kinnison, M.T., Palkovacs, E.P., Darimont, C.T., Carlson, S.M., Paquet, P.C., and Wilmers, C.C. 2009. Letter: Some cautionary notes on fisheries evolutionary impact assessments. Proceedings of the National Academy of Sciences 106: E115. (PDF)

Olsen, E.M., Carlson, S.M., Gjøsæter, J., and Stenseth, N.C. 2009. Nine decades of decreasing phenotypic variability in Atlantic cod. Ecology Letters 12: 622-631. (PDF)

Carlson, S.M., Rich, H.B., and Quinn, T.P. 2009. Does variation in selection imposed by bears drive divergence among populations in the size and shape of sockeye salmon? Evolution 63: 1244-1261. (PDF) (Evolution cover image)

Quinn, T.P., Carlson, S.M., Gende, S.M., and Rich, H.B. 2009. Transportation of Pacific salmon carcasses from streams to riparian forests by bears. Canadian Journal of Zoology 87: 195-203. (PDF)

Darimont, C.T., Carlson, S.M., Kinnison, M.T., Paquet, P.C., Reimchen, T.E., and Wilmers, C.C. 2009. Letter: Reply to Koons: Harvest-related trait changes in an increasingly variable world. Proceedings of the National Academy of Sciences 106: E33. (PDF)

Darimont, C.T., Carlson, S.M., Kinnison, M.T., Paquet, P.C., Reimchen, T.E., and Wilmers, C.C. 2009. Human predators outpace other agents of trait change in the wild. Proceedings of the National Academy of Sciences 106: 952-954. (PDF) Sample of resulting coverage: 1. sciencemag, 2. New York Times, 3. National Geographic, 4. Reuters, 5. "Research Highlight" in Nature.

2008

Carlson, S.M., and Stenseth, N.C. 2008. Commentary: Fishery selection across the millennia. Proceedings of the Royal Society B 275: 2657-2658. (PDF)

Carlson, S.M., Olsen, E.M., and Vøllestad, L.A. 2008. Seasonal mortality and the effect of body size: a review and an empirical test using individual data on brown trout. Functional Ecology 22: 663-673. (PDF)

Carlson, S.M. and Seamons, T.R. 2008. A review of quantitative genetic components of fitness in salmonids: implications for adaptation to future change. Evolutionary Applications 1: 222-238. (PDF) (Evolutionary Applications' most cited paper to date!)

McClure, M.M., Carlson, S.M., Beechie, T.J., Pess, G.R., Jorgenson, J.C., Sogard, S.M., Sultan, S.E., Holzer, D.M., Travis, J., Sanderson, B.L., Power, M.E., and Carmichael, R.W. 2008. Evolutionary consequences of habitat loss for Pacific anadromous salmonids. Evolutionary Applications 1: 300-318. (PDF)

Westley, P.A.H., Carlson, S.M., and Quinn, T.P. 2008. Among-population variation in adipose fin size parallels the expression of other secondary sexual characteristics in sockeye salmon (Oncorhynchus nerka). Environmental Biology of Fishes 81: 439-446. (PDF)

2007

Carlson, S.M., Hilborn, R., Hendry, A.P., and Quinn, T.P. 2007. Predation by bears drives senescence in natural populations of salmon. PLoS ONE 2: e1286. (PDF)

Carlson, S.M., and Quinn, T.P. 2007. Ten years of varying lake level and selection on size-at-maturity in sockeye salmon. Ecology 88: 2620-2629. (PDF) (Ecology cover image)

Edeline, E., Carlson, S.M., Stige, L.C., Winfield, I.J., Fletcher, J.M., James, J.B., Haugen, T.O., Vøllestad, L.A., and Stenseth, N.C. 2007. Trait changes in a harvested population are driven by a dynamic tug-of-war between natural and harvest selection. Proceedings of the National Academy of Sciences 104: 15799-15804. (PDF) Sample of resulting coverage: 1. "News & Views" article in Nature, 2. "Research Focus" in Trends in Ecology & Evolution, 3. This article was chosen by Nature's editors as their 2007 choice for "Research Highlight" in the area of Fisheries.

Carlson, S.M., Edeline, E., Vøllestad, L.A., Haugen, T.O., Winfield, I.J., Fletcher, J.M., James, J.B., and Stenseth, N.C. 2007. Four decades of opposing natural and human-induced artificial selection acting on Windermere pike (Esox lucius). Ecology Letters 10: 512-521. (PDF)

Carlson, S.M., Hendry, A.P., and Letcher, B.H. 2007. Growth rate differences between resident native brook trout and non-native brown trout. Journal of Fish Biology 71: 1430-1447. (PDF)

2006

Johnson, S.P., Carlson, S.M., and Quinn, T.P. 2006. Tooth size and skin thickness in mature sockeye salmon: evidence for habitat constraints and variable investment between the sexes. Ecology of Freshwater Fish 15: 331-338. (PDF)

Rich, H.B., Carlson, S.M., Chasco, B.E., Briggs, K.C., and Quinn, T.P. 2006. Movements of male sockeye salmon, Oncorhynchus nerka, on spawning grounds: effects of in-stream residency, density and body size. Animal Behaviour 71: 971-981. (PDF)

2005 and earlier

Carlson, S.M., Rich, H.B., and Quinn, T.P. 2004. Reproductive life-span and sources of mortality for alternative male life-history strategies in sockeye salmon, Oncorhynchus nerka. Canadian Journal of Zoology 82: 1878-1885. (PDF)

Carlson, S.M., Hendry, A.P., and Letcher, B.H. 2004. Natural selection acting on body size, growth rate and compensatory growth: an empirical test in a wild trout population. Evolutionary Ecology Research 6: 955-973. (PDF)

Stewart, I.A., Carlson, S.M., Boatright, C.P., Buck, G.B., and Quinn, T.P. 2004. Site fidelity of spawning sockeye salmon (Oncorhynchus nerka W.) in the presence and absence of olfactory cues. Ecology of Freshwater Fish 13: 104-110. (PDF)

Carlson, S.M., and Letcher, B.H. 2003. Variation in brook and brown trout survival within and among seasons, species, and age classes. Journal of Fish Biology 63: 780-794. (PDF)