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Journal articles
Schreiber, S.J. and
Lloyd-Smith, J.O. (In review) Invasion success and extinction risk in spatially
heterogeneous
environments.
Polansky,
L., Lloyd-Smith, J.O., de Valpine, P., Getz, W.M. (In review) Likelihood
ridges and the plausibility of strong concavity in population growth rates.
Raffel,
T.R., Lloyd-Smith, J.O., Sessions, S.K., Hudson, P.J., Rohr, J.R. (In review) Disentangling
drivers of parasite age-intensity and
age-distribution relationships using field data, experiments, and
models.
Koelle,
K., Cobey, S., Lloyd-Smith, J.O., Griesemer, S., St.George, K., Grenfell,
B.T., Pascual, M. (In review) Microevolutionary processes underlying the
cluster dynamics of influenza A (H3N2).
Polansky,
L., de Valpine, P., Lloyd-Smith, J.O., Getz, W.M. (In review) Estimating parameters in a
generalized model of density dependence.
Sanchez,
M.S., Lloyd-Smith, J.O., Williams, B.G., Porco, T.C., Ryan, S. J., Borgdorff,
M.W, Mansoer, J., Dye, C., Getz, W.M. (In review) Incongruent HIV and tuberculosis epidemics in Kenya: Interacting epidemics monitor
each other.
Lloyd-Smith, J.O. (In review) Scaling of resource-driven density
dependence in heterogeneous landscapes: dispersal as a case study.
Auvert,
B., Marseille, E., Korenromp, E.L., Lloyd-Smith, J., Sitta, R., Taljaard, D.,
Pretorius, C., Williams, B., Kahn, J.G.
(2008) Estimating the resources needed and savings anticipated from
roll-out of adult male circumcision in sub-Saharan Africa.
PLoS
ONE 3: e2679.
Lloyd-Smith, J.O., Poss, M., Grenfell, B.T. (2008) HIV-1/parasite
co-infection and the emergence of new parasite strains. Parasitology 135: 795-806.
Sanchez,
M.S., Lloyd-Smith, J.O., Porco, T.C., Williams, B.G., Borgdorff, M.W,
Mansoer, J., Salomon, J.A., Getz, W.M. (2008) Impact of HIV on novel strategies for tuberculosis control. AIDS
22: 963-972.
Lloyd-Smith, J.O., Greig, D., Ghneim, G., Hietala,
S., Palmer, L., St. Leger, J., Grenfell, B.T., Gulland, F.M.D. (2007) Cyclical changes in seroprevalence
of leptospirosis in California
sea lions: endemic and epidemic disease in one host species? BMC
Infectious Diseases 7:
125. [PDF]
Graham, A.L., Cattadori, I.M., Lloyd-Smith, J.O.,
Ferrari, M.J., Bjornstad, O.N. (2007) Transmission consequences of
co-infection: cytokines writ large? Trends in Parasitology 23: 284-291. [PDF]
Cross, P.C., Johnson,
P.L., Lloyd-Smith, J.O., Getz,
W.M. (2007) Utility of R0 as a predictor of
disease invasion in structured populations.
Journal of the Royal Society
Interface 4: 315-324. [PDF]
Lloyd-Smith, J.O. Maximum likelihood estimation of the negative
binomial dispersion parameter for highly overdispersed datasets, with
applications to infectious disease data. (2007) PLoS ONE 2: e180. [PDF]
Salomon,
J.A., Lloyd-Smith, J.O., Getz, W.M., Resch, S., Sánchez,
M.S., Porco, T.C., Borgdorff, M.W. (2006) Prospects for advancing tuberculosis
control efforts through novel therapies.
PLoS Medicine 3:
1302-1309. [PDF][Supp.
Info]
Williams,
B.G., Lloyd-Smith, J.O., Gouws, E., Hankins, C., Getz, W.M., Dye, C., Hargrove, J., de
Zoysa, I., Auvert, B. (2006) The potential impact of male
circumcision on HIV in sub-Saharan Africa. PLoS
Medicine 3: 1032-1040. [PDF][Supp.
Info]
Bar-David, S., Lloyd-Smith, J.O., Getz, W.M.
(2006) Dynamics and management
of infectious diseases in colonizing populations. Ecology 87: 1215-1224. [PDF]
Getz,
W.M. and Lloyd-Smith, J.O. (2006)
Comment on “On the regulation of populations in mammals, birds, fish and insects”
I. Science 311: 1100.
[available
at Science online]
Lloyd-Smith,
J.O., Schreiber, S.J., Kopp, P.E.,
Getz, W.M. (2005) Superspreading
and the effect of individual variation on disease emergence. Nature 438: 355-359. [PDF][Supp.
Info][available at Nature online][News & Views]
Bauch, C.T., Lloyd-Smith, J.O., Coffee, M.,
Galvani, A.P. (2005) Dynamically modeling SARS and other newly
emerging respiratory illnesses: past, present, and future. Epidemiology 16: 791-801. [PDF]
Lloyd-Smith,
J.O., Cross, P.C., Briggs, C.J.,
Daugherty, M., Getz, W.M., Latto, J., Sánchez, M.S., Smith, A.B., Swei,
A. (2005) Should we expect population thresholds
for wildlife disease? Trends
in Ecology & Evolution 20: 511-519. [PDF]
Cross, P.C., Lloyd-Smith, J.O., Johnson, P.L.,
Getz, W.M. (2005) Dueling time scales of host mixing and
disease recovery determine invasion of disease in structured populations. Ecology Letters 8: 587-595. [PDF]
Cross, P.C., Lloyd-Smith, J.O., Getz, W.M. (2005)
Disentangling association patterns in fission-fusion societies using African
buffalo as an example. Animal
Behaviour 69: 499-506.
[PDF]
Porco, T.C., Lloyd-Smith, J.O., Gross, K.L.,
Galvani, A.P. (2005) The effect of treatment on pathogen virulence. Journal of Theoretical Biology 233: 91-102. [PDF]
Lloyd-Smith,
J.O., Getz, W.M., Westerhoff, H.V.
(2004) Frequency-dependent incidence in sexually-transmitted disease models:
portrayal of pair-based transmission and effects of illness on contact
behaviour. Proceedings of the Royal
Society, Series B, Biological Sciences 271: 625-634. [PDF]
Cross, P.C., Lloyd-Smith, J.O., Bowers, J., Hay,
C.T., Hofmeyr, M., Getz, W.M. (2004)
Integrating association data and disease dynamics: an illustration
using African Buffalo in Kruger
National Park. Annales Zoologici Fennici 41: 879-892. [PDF]
Lloyd-Smith,
J.O.*, Galvani, A.P.*, Getz, W.M. (2003)
Curtailing transmission of severe acute respiratory syndrome within a
community and its hospital. Proceedings
of the Royal Society, Series B, Biological Sciences 270, 1979-1989. [PDF]
Book chapters (peer-reviewed)
Lloyd-Smith,
J.O., Schreiber, S.J., Getz, W.M. (2006) Moving beyond
averages: Individual-level variation in disease transmission. In Mathematical studies on human disease
dynamics: Emerging paradigms and challenges, ed. Gumel, A.B.,
Castillo-Chavez, C., Mickens, R.E., Clemence, D.P., AMS Contemporary
Mathematics Series, Vol 410, 235-258. [PDF]
Bar-David,
S., Lloyd-Smith, J.O., Getz, W.M. (2006)
Infectious disease in spatially expanding populations: a model for
reintroduced species. In Conservation
Biology in Asia, ed. McNeely, J.A., McCarthy, T. M., Smith, A.,
Olsvig-Whittaker, L., Wikramanayake, E.D., Society for Conservation Biology
and Resources Himalaya, Kathmandu, Nepal, 340-362.
Getz, W. M., and
Lloyd-Smith, J. O. (2006) Basic methods for modeling the invasion and spread
of contagious disease. In Disease evolution: Models, concepts and
data analyses, ed. Feng, Z., Dieckmann, U., Levin, S.A. AMS/DIMACS Vol. 71: 87-109.
Getz, W.M., Lloyd-Smith, J.O, Cross, P.C.,
Bar-David, S., Johnson, P.L., Porco, T.C., Sánchez, M.S. (In press) Modeling the invasion and spread of
contagious disease in heterogeneous populations. In Disease evolution: Models, concepts
and data analyses, ed. Feng, Z., Dieckmann, U., Levin, S.A. AMS/DIMACS Vol. 71: 113-144.
Work in other fields
Crawford, M.A., Bloom, M.,
Broadhurst, C.L., Schmidt, W.F., Cunnane,
S.C., Galli, C., Gehbremeskel,
K., Linseisen, F., Lloyd-Smith, J.,
Parkington, J. (1999) Evidence for the unique function of DHA during the
evolution of the modern hominid brain. Lipids
34 supp: S39-47.
Graham, S.J., Stanchev,
P.L., Lloyd-Smith, J.O.A., Bronskill,
M.J., Plewes, D.B. (1995) Changes in fibroglandular volume and water content
of breast tissue during the menstrual cycle observed by MR imaging at 1.5
T. Journal of Magnetic
Resonance Imaging 5:
695-701.
Bloom, M., Linseisen, F., Lloyd-Smith, J., Crawford, M.A.
(1999) Insights from NMR on the functional role of polyunsaturated lipids in
the brain. Proceedings of the 1998 Enrico Fermi International School of
Physics, on “Magnetic Resonance and Brain Function: Approaches from
Physics”, ed. B. Maraviglia, Italian Physical Society.
*authors contributed
equally
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