Okrent, R.A., and M.C. Wildermuth (2011) Evolutionary history of the GH3 family of acyl adenylases in rosids. Plant Molecular Biology 76: 489-505.  Okrent and Wildermuth 2011.pdf

Jones, A.M., and M.C. Wildermuth (2011) The phytopathogen Pseudomonas syringae pv tomato DC3000 has three high affinity iron scavenging systems functional under iron limitation but dispensable for pathogenesis. Journal of Bacteriology 193: 2767-2775.  Jones Wildermuth JBact 2011.pdf

Chandran, D., Inada, N., and M.C. Wildermuth (2011) Laser microdissection of plant-fungus interaction sites and isolation of RNA for downstream expression profiling. Methods in Molecular Biology: Plant Immunity (ed. J. McDowell) 712: 241-62, Humana Press, New York.

Chandran et al. Methods Mol Bio 2011a.pdf

Chandran, D., Hather, G., and M.C. Wildermuth (2011) Global expression profiling of RNA from laser microdissected cells at fungal–plant interaction sites. Methods in Molecular Biology: Plant Immunity (ed. J. McDowell) 712: 263-81, Humana Press, New York.

Chandran et al. Methods Mol Bio 2011b.pdf

Ford, K.A., Casida, J.E., Chandran, D., Gulevich, A.G., Okrent, R.A., Durkin, K.A., Sarpong, R., Bunnelle, E.M.,  and M.C. Wildermuth (2010) Neonicotinoid insecticides induce salicylate-associated plant defense responses. Proceedings of the National Academy of Sciences U S A 107: 17527-32.  Ford et al. PNAS 2010.pdf     Ford et al. Supplemental.pdf

M.C. Wildermuth (2010) Modulation of host nuclear ploidy: a common mechanism of obligate plant biotrophs. Current Opinion in Plant Biology 13: 449-58.  Wildermuth COPB 2010.pdf

Chandran, D., Inada, N., Hather, G., Kleindt, C.K. and M.C. Wildermuth (2009) Laser microdissection of Arabidopsis cells at the powdery mildew infection site reveals site-specific processes and regulators. Proceedings of the National Academy of Sciences 107: 460-5. Epub Dec 14, 2009.  Chandran et al. PNAS 2009.pdf     Chandran et al. Supporting Info.pdf

Okrent, R.A., Brooks, M.D., and M.C. Wildermuth (2009) Arabidopsis GH3.12 (PBS3) conjugates amino acids to 4-substituted benzoates and is inhibited by salicylate. Journal of Biological Chemistry 284: 9742-9754. Okrent et al. J Biol Chem 2009.pdf

Chandran, D., Tai, Y.C., Hather, G., Dewdney, J., Denoux, C. Burgess, D.G., Ausubel, F.M., Speed, T.P., and M.C. Wildermuth (2009) Temporal global expression data reveals known and novel salicylate-impacted processes and regulators mediating powdery mildew growth and reproduction on Arabidopsis. Plant Physiology 149: 1435-1451.  Chandran et al. Plant Phys 2009.pdf   Supplemental

Zhang, N.R., Wildermuth, M.C., and T.P. Speed (2008) Transcription factor binding site prediction with multivariate gene expression data. Annals of Applied Statistics 2: 332-365.

Zhang et al. Annals of Applied Statistics 2008.pdf     Zhang et al. Supplement.pdf

Jones, A.M., Lindow, S.E., and M. C. Wildermuth (2007) Salicylic acid, yersiniabactin, and pyoverdin production by the model phytopathogen Pseudomonas syringae pv tomato DC3000: Synthesis, regulation, and impact on tomato and Arabidopsis host plants. Journal of  Bacteriology 189: 6773-6786; Epub 27 July 2007.   Jones et al.  JBact 2007.pdf

Nobuta, K., Okrent, R.A., Stoutemyer, M., Rodibaugh N., Kempema, L., Wildermuth*, M.C., and Innes*, R.W. (2007) The GH3 acyl adenylase family member PBS3 regulates salicylic-acid dependent defense responses in Arabidopsis. Plant Physiology 144: 1144-1156; Epub 2007 Apr 27. *=co-senior authors    Nobuta et al. PlantPhys 2007.pdf

Strawn, M.A., Marr, S.K., Inoue, K., Inada, N., Zubieta, C., and M.C. Wildermuth (2006) Arabidopsis isochorismate synthase functional in pathogen-induced salicylate biosynthesis exhibits properties consistent with a role in diverse stress responses. Journal of  Biological Chemistry 282: 5919-5933; Epub 2006 Dec 26.   Strawn et al. J Biol Chem 2006.pdf

Wildermuth, M.C. (2006) Variations on a theme: synthesis and modification of plant benzoates. Current Opinion in Plant Biology 9: 288–296.  Wildermuth COPB Review 2006.pdf

US Patent, US07070772, (granted 7/04/2006) Salicylic biosynthetic genes and uses thereof. Mary Wildermuth, Frederick Ausubel, and Julia Dewdney. The General Hospital Corporation.

Inada, N. and M.C. Wildermuth (2005) Novel tissue preparation method and cell-specific marker for laser microdissection of Arabidopsis mature leaf. Planta Apr;221(1):9-16 (2005). Epub 2004 Dec 2.   Inada and Wildermuth Planta 2004.pdf

Powell, C., Kremer, N., Lui, D., Lui, C., Cooper, C. , Dewdney, J., Richter, B., Wildermuth, M.C., and F.M. Ausubel (2005) Integrated Microarray Database System (IMDS). Queriable database for the storage of raw and analyzed microarray data focused on host-pathogen interactions;

Minorsky, PV et al. (2003) Editorial: Achieving the in Silico plant. Systems Biology and the Future of Plant Biological Research. Plant Physiology 132: 404-409.

Gu, Y.-Q., Wildermuth, M.C., Chakravarthy, S., Loh, Y.-T., Yang, C., He, X., Han, Y., and G.B. Martin (2002) Tomato transcription factors Pti4, Pti5, and Pti6 activate defense responses in Arabidopsis. Plant Cell 14: 817-831.    Gu et al. Plant Cell 2002.pdf

Wildermuth, M.C., Dewdney, J., Wu, G., and F.M. Ausubel (2001) Isochorismate synthase is required to synthesize salicylic acid for plant defense. Nature 414: 562-565.  Wildermuth Nature 2001.pdf

Wildermuth, M.C., Wu, G., and F.M. Ausubel (2001) PromoterScan and PromoterExtract: Programs for the analysis of Arabidopsis cis-acting DNA regulatory elements. Compatible with PC, MAC, NT, or LINUX operating systems.

Wildermuth, Mary C (2000) [MiniReview] Metabolic control analysis: biological applications and insights. GenomeBiology 1(6): reviews 1031.1-1031.5 

Dewdney, J., Reuber, T.L., Wildermuth, M.C., Devoto, A., Cui, J., Stutius, L.M., Drummond, E.P., and F.M. Ausubel (2000) Three unique mutants of Arabidopsis identify EDS loci required for limiting growth of a biotrophic fungal pathogen. The Plant Journal 24: 205-218.  Dewdney et al. 2000.pdf

Guenther, A., Archer, S., Greenberg, J., Harley, P., Helmig, D., Klinger, L., Vierling, L., Wildermuth, M., Zimmerman, P., and S. Zitzer (1999) Biogenic hydrocarbon emissions and landcover/climate change in a subtropical savanna. Physics and Chemistry of the Earth 24: 659-667.

Fall, R. and M. C. Wildermuth (1998) Isoprene synthase: from biochemical mechanism to emission algorithm. Journal of Geophysical Research 103: 25,599-25,609.

Wildermuth, M.C. and R. Fall (1998) Biochemical characterization of stromal and thylakoid-bound isoforms of isoprene synthase in willow leaves. Plant Physiology 116: 1111-1121.

Wildermuth, M.C. and R. Fall (1996) Light-dependent isoprene emission: Characterization of a thylakoid-bound isoprene synthase in Salix discolor chloroplasts. Plant Physiology 112: 171-82.

Monson, R.K., Harley, P.C., Litvak, M.E., Wildermuth, M., Guenther, A.B., Zimmerman, P.R., and R. Fall (1994) Environmental and developmental controls over the seasonal pattern of isoprene emission from aspen leaves. Oecologia 99: 260-270.

Guenther, A., Zimmerman, P., and M. Wildermuth (1994) Natural volatile organic compound emission rate estimates for U.S. woodland landscapes. Atmospheric Environment 28: 1197-1210.