Publications

2024 (and in press)

Andrews, L., & Grantham, T. E. (2024). Strategic stream gauging network design for sustainable water management. Nature Sustainability. 7: 714-723.

Ayres, J.R., Yarnell, S.M., Baruch, E., Lusardi, R.A., Grantham, T.E. (2024). Perennial and non-perennial streamflow regime shifts across California, USA. Water Resources Research, 035768.

Carlson, S.M., Ruhi, A., Bogan, M.T., Wölfle Hazard, C., Ayers, J., Grantham, T.E., Batalla, R.J. & C. Garcia (2024). Losing flow in free-flowing, Mediterranean-climate streams. Frontiers in Ecology and the Environment,  22(5): e2737.

Gill, B.A., Allen, D.C., Mims, M.C. Neeson, T.M., Ruhi A., Atkinson, C.A., Shogren, A.J., Apgar, T.M., Compson, Z.G., Cook, S., Trumbo, D.R., Busch, M.H.,. Hollien, K.D., Leathers, K., Malish, M.C., O’Malley, G.L., Silknetter, S., Smith, C.R., Dunleavy, H. & M. T. Bogan (2024). Combined benthic and stream edge sampling better represent macroinvertebrate assemblages than benthic sampling alone along an aridity gradient. Limnology & Oceanography Methods, 22(4): 208-216.

Leathers, K., Herbst. D., de Mendoza, G., Doerschlag, G. & A. Ruhi (2024). Climate change is poised to alter mountain stream ecosystem processes via organismal phenological shifts. Proceedings of the National Academy of Sciences of the USA, 121(14):e2310513121.

Moravek, J., Soto, T., Brashares, J. & A. Ruhi (2024). Restored off-channel pond habitats create thermal regime diversity and refuges within a Mediterranean-climate watershed. Restoration Ecology, 32(4): e14110.

Saccò, M., Mammola, S., Altermatt, F. […]*, Ruhi, A., Marthe M. Gagnon, M., Allentoft, M.E. & R. Reinecke (2023). Groundwater is a hidden global keystone ecosystem. Global Change Biology, 30(1): e17066  *and 45 other coauthors.

Siqueira, T., Hawkins, C., Olden, J., Tonkin, J., Comte, L., Saito, V.S., Anderson, T.L., Barbosa, G.P., Bonada, N., Bonecker, C.C., Cañedo-Argüelles, M., Datry, T., Flinn, M. B., Fortuño, P., Gerrish, G.A., Haase, P., Hill, J.J., Hood, J.M., Huttunen, K.L., Jeffries, M.J., Muotka, T., O’Donnell, D.R., Paavola, R., Paril, P., Paterson, M.J., Patrick, C.J., Perbiche-Neves, G., Rodrigues, L.C., Schneider, S.C., Straka, M. & A. Ruhi  (2023). Understanding temporal variability across trophic levels and spatial scales in freshwater ecosystems. Ecology, 105(2):e4219.

2023

Baruch, E.M., Harms, T.K., Ruhi, A., Lu, M., Gaines-Sewell, L. & J.L. Sabo (2023). Food web efficiency in desert streams. Limnology & Oceanography, 68(3): 723-734.

Carvajal-Quintero, J., Comte, L., Giam, X., Olden, J.D., Brose, U., Eros, T., Filipe, A.F., Fortin, M.J., Irving, K., Jacquet, C., Larsen, S., Ruhi, A., Sharma, S., Villalobos, F. & P.A. Tedesco (2023). Scale of population synchrony confirms macroecological estimates of minimum viable range size. Ecology Letters, 26(2): 291-301.

Chalise, D.R., Sankarasubramanian, A., Olden, J.D. & A. Ruhi (2023). Spectral signatures of flow regime alteration by dams across the United States. Earth’s Future, 11(2):e2022EF003078.

Chen, E.K., Satterthwaite, W.H., Kormos, B.J., Johnson, R.C., Phillis, C.C., and Carlson, S.M. 2023. Age structure of natural versus hatchery-origin endangered Chinook salmon and implications for fisheries management in California. Marine Ecology Progress Series, 723: 37-55.

Darimont, C.T., Cooke, R., Bourbonnais, M.L., Bryan, H.M., Carlson, S.M., Estes, J.A., Galetti, M., Levi, T., Maclean, J.L., McKechnie, I., Paquet, P.C., and Worm, B. 2023. Humanity’s diverse predatory niche and its ecological consequences. Communications Biology 6, article 609.

Dillis, C., Butsic, V., Georgakakos, P., Portugal, E. and Grantham, T.E. 2023. Water demands of permitted and unpermitted cannabis cultivation in Northern California. Environmental Research Communications 5: 025005.

Dralle, D.N., Rossi, G., Georgakakos, P., Hahm, W.J., Rempe, D.M., Blanchard, M., Power, M.E., Dietrich, W.E., and Carlson, S.M. 2023. The salmonid and the subsurface: Hillslope storage capacity determines the quality and distribution of fish habitat. Ecosphere 14(2): e4436.

Jumani, S., Andrews, L., Grantham, T.E., McKay, S.K., Duda, J., and Howard, J. 2023. A decision-support framework for dam removal planning and its application in northern California. Environmental Challenges 100731.

Leathers, K., Herbst, D., Safeeq, M. & A. Ruhi (2023). Dynamic, downstream-propagating thermal vulnerability in a mountain stream network: implications for biodiversity in the face of climate change. Limnology and Oceanography, 68(S1): 101-114.

Mejia, F.H., Ouellet, V., Briggs, M.A., Carlson, S.M., Casas-Mulet, R., Chapman, M., Collins, M.J., Dugdale, S.J., Ebersole, J.L., Frechette, D.M., Fullerton, A.H., Gillis, C.-A., Johnson, Z.C., Kelleher, C., Kurylyk, B.L., Lave, R., Letcher, B.H., Myrvold, K.M., Nadeau, T.-L., Neville, H., Piégay, H., Smith, K.A., Tonolla, D., and Torgersen, C.E. 2023. Closing the gap between science and management of cold-water refuges in rivers and streams. Global Change Biology 29: 5482-5508.

Moidu, H., Rodríguez‐Lozano, P., Leidy, R., Bogan, M., Grantham, T. E., and Carlson, S. M. 2023. Ecological consequences of shifting habitat mosaics within and across years in an intermittent stream. Freshwater Biology.

Oshun, M. and Grantham, T.E., 2023. Leveraging species richness and ecological condition indices to guide systematic conservation planning. Journal of Environmental Management 341.

Pak, N., Colombano D.D., Greiner, T., Hobbs, J.A., Carlson, S.M. & A.Ruhi (2023).

Disentangling abiotic and biotic controls of Pacific herring population stability across the San Francisco Estuary. Ecosphere 14(5): e4440.

Polson, M., Bodwitch, H., Biber, E., Butsic, V. and Grantham, T.E. 2023. After legalization: Cannabis, environmental compliance, and agricultural futures. Land Use Policy 126: 106531.

Pregler, K.C., Obedzinski, M., Gilbert-Horvath, E., White, B., Carlson, S.M., Garza. J.C. 2023. Assisted gene flow from outcrossing shows the potential for genetic rescue in an endangered salmon population. Conservation Letters 16: e12934.

Rossi, G., Obedzinski, M., Pneh, S., Nossaman Pierce, S., Boucher, W.T., Slaughter, W.M., Flynn, K.M., and Grantham, T.E. 2023. Flow augmentation from off‐channel storage improves salmonid habitat and survival. North American Journal of Fisheries Management 10954.

Sanchez-Montoya, M.M., Datry, T., Ruhi, A., Carlson, S.M., Corti, R. & K. Tockner (2023). Intermittent rivers and ephemeral streams are pivotal corridors for aquatic and terrestrial animals. BioScience, 73(4): 291–301.

Tu, T., Comte, L. & A. Ruhi (2023). The color of environmental noise in river networks. Nature Communications, 14:1728.

2022

Baruch, E.M., Ruhi, A., Harms, T.K. & J.L. Sabo (2022). Flow variation at multiple scales filters fish life histories and constrains community diversity in desert streams. Ecosphere, 13(6):e4086.

Mor, J.R, Muñoz, I., Sabater, S., Zamora, L. & A. Ruhi (2022). Energy limitation or sensitive predators? Trophic and non-trophic impacts of wastewater pollution on stream food webs. Ecology, 103(2): e03587.

Benito. X ., Luethje, M., Schneider, T., Fritz, S.C., Baker, P., Pedersen, E., Gauzere, P., Nascimiento, M., Bush, M. & A. Ruhi (2022). Ecological resilience in tropical Andean lakes: a paleolimnological perspective. Limnology & Oceanography, 67:S23–S37.

Bouchard, C., Buoro, M., Lebot, C., and Carlson, S.M. 2022. Synchrony in population dynamics of juvenile Atlantic salmon: analyzing spatiotemporal variation and the influence of river flow and demography. Canadian Journal of Fisheries and Aquatic Sciences 79(5): 782-794.

Chen, E., Galvez, J., Carlson, S.M. 2022. Towards building a more diverse and inclusive culture in the fisheries classroom. Fisheries 47(8): 333-336.

Colombano, D., Carlson, S.M., Hobbs, J. & A. Ruhi (2022). Four decades of climatic fluctuations and fish recruitment stability across a marine-freshwater gradient. Global Change Biology, 28(17): 5104-5120.

Dillis, C., Butsic, V., Moanga, D., Parker-Shames, P., Wartenberg, A., and Grantham, T.E. 2022. The threat of wildfire is unique to cannabis among agricultural sectors in California. Ecosphere 13( 9): e4205.

Fournier, R., de Mendoza, G., Sarremejane, R. & A. Ruhi (2022). Isolation controls reestablishment mechanisms and post-drying community structure in an intermittent stream. Ecology, 104(2):e3911.

Gill, B.A., Sanabria, A., Gonzalez, M., Carlson, S.M., and Bogan, M.T. 2022. Effects of drying and orientation to perennial refuges on aquatic biodiversity across two basins diffe5ring in aridity. Ecosphere 13(5): e4071.

Grantham, T.E., Carlisle, D.M., Howard, J., Lane, B., Lusardi, R., Obester, A., Sandoval-Solis, S., Stanford, B., Stein, E.D., Taniguchi-Quan, K.T. and Yarnell, S.M. 2022. Modeling functional flows in California’s rivers. Frontiers in Environmental Science 7877473.

Kastl, B., Obedzinski, M., Carlson, S.M., Boucher, W.T. and Grantham, T.E. 2022. Migration in drought: Receding streams contract the seaward migration window of endangered salmon. Ecosphere 13(12): e4295.

Kislik, C., Dronova, I., Grantham, T.E. and Kelly, M. 2022. Mapping algal bloom dynamics in small reservoirs using Sentinel-2 imagery in Google Earth Engine. Ecological Indicators 140: 109041.

Kocik, J., Hayes, S.A., Carlson, S.M., and Cluer, B. 2022. A Resist-Accept-Direct (RAD) future for salmon in Maine and California: Salmon at the southern edge. Fisheries Management and Ecology 29(4): 456-474. https://doi.org/10.1111/fme.12575

Kupferberg, S.J., Moidu, H., Adams, A.J., Catenazzi, A. Grefsrud, M., Bobzien. S., Leidy, R.A., and Carlson, S.M. 2022. Seasonal drought and its effect on frog population dynamics and amphibian disease in intermittent streams. Ecohydrology 15(5): e2395.

Lamarins, A., Hugon, F., Piou, C., Papaïx, J., Prévost, E., Carlson, S.M., and Buoro, M. 2022. Implications of dispersal in Atlantic salmon: lessons from a demo-genetic agent-based model. Canadian Journal of Fisheries and Aquatic Sciences 79: 2025-2042.

Rossi, G.J., Power, M.E., Carlson, S.M., and Grantham, T.E. 2022. Seasonal growth potential of Oncorhynchus mykiss in streams with contrasting prey phenology and streamflow. Ecosphere 13( 9): e4211.

Ruhi, A., Hwang, J., Devineni, N., Mukhopadhyay, S., Kumar, H., Comte, L., Worland, S. &  A. Sankarasubramanian (2022). How does flow alteration propagate across a large, highly-regulated basin? Dam attributes, network context, and implications for biodiversity. Earth’s Future, 10(6): e2021EF002490.

Serra-Llobet, A., Jähnig, S.C., Geist, J., Kondolf, G.M., Damm, C., Scholz, M., Lund, J., Opperman, J., Yarnell, S., Pawley, A., Shader, E., Cain, J., Zingraff-Harned, A., Grantham, T.E., Eisenstein, W. and Schmitt, R. 2022. Restoring rivers and floodplains for habitat and flood risk reduction: Experiences in multi-benefit floodplain management from California and Germany. Frontiers in Environmental Science 7778568.

Stein, E., McClain, M., Sengupta, A., Grantham, T.E., Zimmerman, J. and Yarnell, S. 2022. “Allocations and environmental flows” Chapter 5 in Water Resources Allocation and Agriculture: Transitioning from Open to Regulated Access. Edited by: Josselin Rouillard, Christina Babbitt, Edward Challies, Jean-Daniel Rinaudo. IWA Publishing.

Yarnell, S.M., Willis, A., Obester, A., Peek, R.A., Lusardi, R.A., Zimmerman, J., Grantham, T.E. and Stein, E.D. 2022. Functional flows in groundwater-influenced streams: Application of the California Environmental Flows Framework to determine ecological flow needs. Frontiers in Environmental Science 788295.

2021

Chalise, D.R., Sankarasubramanian, A. & A. Ruhi (2021). Dams and climate interact to alter river flow regimes across the United States. Earth’s Future, 9(4), p.e2020EF001816.

Comte, L., Olden, J.D., Tedesco, P., Ruhi, A & X. Giam (2021). Climate and land-use changes interact to drive long-term reorganization of riverine fish communities globally. Proceedings of the National Academy of Sciences of the USA, 118(27):118 (27) e2011639118.

Comte, L., Grantham, T. & A. Ruhi (2021). Human stabilization of river flows is linked with fish invasions across the United States. Global Ecology and Biogeography, 30(3):725–737.

Comte, L., et al.* (2021). RivFishTIME: A global database of fish time-series to study global change ecology in riverine systems. Global Ecology and Biogeography, 30(1):38-50. [*more than 30 co‑authors].

Cooke, S.J., Twardek, W.M., Lynch, A.J., Cowx, I.G., Olden, J.D., Funge-Smith, S., Lorenzen, K., Arlinghaus, R., Chen, Y., Weyl, O.L.F., Nyboer, E.A., Pompeu, P.S., Carlson, S.M., Koehn, J.D., Pinder, A.C., Raghavan, R., Phang, S., Koning, A.A., Taylor, W.W., Bartley, D. and Britton, J.R. 2021. A global perspective on the influence of the COVID-19 pandemic on freshwater fish biodiversity. Biological Conservation 253: 108932.

Dillis, C., Bustic, V., Zipper, S., Carah, J., and Grantham, T.E. 2021. Cannabis farms in California rely on wells outside of regulated groundwater basins. Environmental Research Communications 3: 075005.

Dillis, C., Biber, E., Bodwitch, H., Butsic, V., Carah, J., Parker-Shames, P., Polson, M., and Grantham, T.E. 2021. Shifting geographies of legal cannabis production in California. Land Use Policy 105: 105369.

Harper, M., H.S. Mejbel, D. Longert, R. Abell, T.D. Beard Jr, J.R. Bennett, S.M. Carlson, W. Darwall, A. Dell, S. Domisch, D. Dudgeon, J. Freyhof, I. Harrison, K.A. Hughes, S.C. Jähnig, J.M. Jeschke, R. Lansdown, M. Lintermans, A.J. Lynch, H.M.R. Meredith, S. Molur, J.D. Olden, S.J. Ormerod, H. Patricio, A.J. Reid, A. Schmidt-Kloiber, M. Thieme, D. Tickner, E. Turak, O.L.F. Weyl and S.J. Cooke. 2021. Twenty-five essential research questions to inform the protection and restoration of freshwater biodiversity. Aquatic Conservation: Marine and Freshwater Ecosystems 31(9): 2632-2653.

Hwang, J., Kumar, H., Ruhi, A., Sankarasubramanian, A. and Devineni, N., 2021. Quantifying dam‐induced fluctuations in streamflow frequencies across the Colorado River Basin. Water Resources Research, 57(10):p.e2021WR029753.

Larsen, L., Comte L., Filipe A.F., Fortin M.-J., Jacquet C., Remo Ryser, Tedesco P.A., Brose U., Erős T., Giam X., Irving K., Ruhi A., Sharma S., Olden J.D (2021). The geography of metapopulation synchrony in dendritic river networks. Ecology Letters, 24:791–801.

Moidu, H., Obedzinski, M., Carlson, S.M. and Grantham, T.E. 2021. Spatial patterns and sensitivity of intermittent stream drying to climate variability. Water Resources Research: e2021WR030314.

Patrick, C.J., McCluney, K.E., Ruhi, A., Gregory, A., Sabo, J. & J.H. Thorp (2021). Multi-scale biodiversity drives temporal variability in macrosystems. Frontiers in Ecology and the Environment, 19(1):47-56.

Sarremejane, R., Stubbington, R., England, E., Sefton, C.E.M., Eastman, M., Parry, S. & A. Ruhi (2021). Drought effects on invertebrate metapopulation dynamics and quasi-extinction risk in an intermittent river network. Global Change Biology, 27(17):4024–4039.

Stein, E.D., Zimmerman, J., Yarnell, S.M., Stanford, B., Lane, B., Taniguchi-Quan, K.T., Obester, A., Grantham, T.E., Lusardi, R.A. and Sandoval-Solis, S., 2021. The California Environmental Flows Framework: Meeting the Challenges of Developing a Large-Scale Environmental Flows Program. Frontiers in Environmental Science 769943.

Vander Vorste, R, Stubbington, R., Acuña, V., Bogan, M.T., Bonada, N., Cid. N., Datry, T., Storey, R., Wood, P.J. & A. Ruhi (2021). Climatic aridity increases temporal nestedness of invertebrate communities in naturally drying rivers. Ecography, 44(6):860-869.

2020

Allen, D., Datry, T., Boersma, K., Bogan, M., Boulton, A.J., Bruno, D., Busch, M., Costigan, K., Dodds, W.K., Fritz, K., Godsey, S.E., Jones, J.B., Kaletova, T., Kampf, S.K., Mims, M.C., Neeson, T.M., Olden, J.D., Pastor, A.V., Poff, N.L. Ruddell, B.L., Ruhi, A., Singer, G., Vezza, P., Ward, A.S. & M. Zimmer (2020).  River ecosystem conceptual models and non-perennial rivers: A critical review. Wiley Interdisciplinary Reviews: Water, 7(5):e1473.

Carlson, S.M., Rodríguez-Lozano, P., Moidu, H., and Leidy, R.A. 2020. Scavenging of animal carcasses by Gumaga nigricula (Sericostomatidae, Trichoptera), an apparent herbivore. Western North American Naturalist 80: 551-555.

Dillis, C., McIntee, C., Butsic, V., Le, L., Grady, K., and Grantham, T.E. 2020. Water storage and irrigation practices drive seasonal patterns of water extraction and use in Northern California. Journal of Environmental Management 272: 110955.

Erős, T., Comte, L., Filipe, A.F., Ruhi, A., Tedesco, P.A., Brose, U. Fortin, M.J., Giam, X., Irving, K., Jacquet, C., Larsen, S., Sharma, S. & J.D. Olden (2020). Effects of nonnative species on the stability of riverine fish communities. Ecography, 43(8): 1156-1166.

Fernández-Chacón, A. Villegas-Ríos, D., Moland, E., Baskett, M.L., Olsen, E.M., and Carlson, S.M. 2020. Protected areas buffer against harvest selection and rebuild phenotypic complexity. Ecological Applications 30(5): e02108. https://doi.org/10.1002/eap.2108.

Huber, E.R. and Carlson, S.M. 2020. Environmental correlates of fine-scale juvenile steelhead trout (Oncorhynchus mykiss) habitat use and movement patterns in an intermittent estuary during drought. Environmental Biology of Fishes 103: 509-529. https://doi.org/10.1007/s10641-020-00971-y

Kelson, S.J., Carlson, S.M., and Miller, M.R. 2020. Indirect genetic control of migration in a salmonid fish. Biology Letters 16: 20200299.

Kelson, S.J., Miller, M.R., Thompson, T.Q., O’Rourke, S.M., and Carlson, S.M. 2020. Temporal dynamics of migration-linked genetic variation are driven by streamflows and riverscape permeability. Molecular Ecology 29: 870-885.

Kelson, S.J., Power, M.E., Finlay, J.C., and Carlson, S.M. 2020. Partial migration alters population ecology and food chain length: evidence from a salmonid fish. Ecosphere 11: e03044.

Oke, K.B., Cunningham, C.J., Westley, P.A.H., Baskett, M.L., Carlson, S.M., Clark, J., Hendry, A.P., Karatayev, V.A., Kendall, N.W., Kibele, J., Kindsvater, H.K., Kobayashi, K.M., Lewis, B., Munch, S., Reynolds, J.D., Vick, G.K., and Palkovacs, E.P. 2020. Recent declines in salmon body size impact ecosystems and fisheries. Nature Communications 11: 4155.

Rodríguez-Lozano, P., Woelfle-Erskine, C., Bogan, M.T., and Carlson, S.M. 2020. Are non-perennial rivers considered as valuable and worth of conservation as perennial rivers? Sustainability 12, 5782.

Sanchez-Montoya, M., Tockner, K., von Schiller, D., Miñano, J., Catarineu, C., Lencina, J.L., Gonzalez-Barbera, G. &. A. Ruhi (2020). Dynamics of ground-dwelling arthropod metacommunities in intermittent streams: the key role of dry riverbeds. Biological Conservation, 241:108328.

Sturrock, A.M., Carlson, S.M., Wikert, J.D., Heyne, T., Nussle, S., Merz, J.E., Sturrock, H.J.W., and Johnson, R.C. 2020. Unnatural selection of salmon life histories in a modified riverscape. Global Change Biology 26: 1235-1247.

Urban, M.C., Strauss, S.Y., Pelletier, F., Palkovacs, E.P., Leibold, M.A., Hendry, A.P., De Meester, L., Carlson, S.M., Angert, A.L., and Giery, S.T. 2020. Evolutionary origins for ecological patterns in space. Proceedings of the National Academy of Sciences USA 117: 17482-17490.

Vander Vorste, R., Obedzinski, M., Nossaman Pierce, S., Carlson, S.M. & Grantham, T.E. 2020. Refuges and ecological traps: extreme drought threatens persistence of an endangered fish in intermittent streams. Global Change Biology 26: 3834-3845.

Wang, T., Kelson, S.J., Greer, G., Thompson, S.E., and Carlson, S.M. 2020. Tributary confluences are dynamic thermal refuges for a juvenile salmonid in a warming river network. River Research and Applications 36: 1076-1086.

Yarnell, S.M., Stein, E.D., Webb, J.A., Grantham, T.E., Lusardi, R.A., Zimmerman, J., Peek, R.A., Lane, B.A., Howard, J. & Sandoval‐Solis, S. 2020. A functional flows approach to selecting ecologically relevant flow metrics for environmental flow applications. River Research and Applications 36: 318-324.

2019

Anderson, E.P., Jackson, S., Tharme, R.E., Douglas, M., Flotemersch, J.E., Zwarteveen, M., Lokgariwar, C., Montoya, M., Wali, A., Tipa, G.T. Jardine, T.D., Olden, J.D., Cheng, L., Conallin, J., Cosens, B., Dickens, C., Garrick, D., Groenfeldt, D., Kabogo, J., Roux, D., Ruhi, A. & A.H. Arthington (2019). Understanding rivers and their social relations: A critical step to advance environmental water management. Wiley Interdisciplinary Reviews: Water, 6(6):e1381.

Bodwitch, H., Carah, C., Daane, K., Getz, C., Grantham, T.E., Hickey, G. & Wilson, H. 2019. Growers say cannabis legalization excludes small growers, supports illicit markets, undermines local economies. 73: 177-184.

Bogan, M.T., Leidy, R.A., Neuhaus, L., Hernandez, C.J., and Carlson, S.M. 2019. Biodiversity value of remnant pools in an intermittent stream during the great California drought. Aquatic Conservation: Marine and Freshwater Ecosystems 29: 976-989.

Dillis, C., Grantham, T.E., McIntee, C., McFadin, B. & Grady, K. 2019. Watering the Emerald Triangle: Irrigation sources used by cannabis cultivators in Northern California. 73: 146-153

Grantham, T.E., Matthews, J.H. & Bledsoe, B.P. 2019. Shifting currents: Managing freshwater systems for ecological resilience in a changing climate. Water Security 8: 100049.

Grantham, T.E., Zimmerman, J., Carah, J. & Howard, J. 2019. Stream flow modeling tools inform environmental water policy in California. California Agriculture 73: 33-39.

Greer, G., Carlson, S.M., Thompson, S.E. 2019. Evaluating definitions of salmonid thermal refugia using in situ measurements in the Eel River, Northern California. Ecohydrology 12: e2101.

Kelson, S.J., Miller, M.R., Thompson, T.Q., O’Rourke, S.M., and Carlson, S.M. 2019. Do genomics and sex predict migration in a partially migratory salmonid fish, Oncorhynchus mykiss? Canadian Journal of Fisheries and Aquatic Sciences 76: 2080-2088.

Kelson, S.J. and Carlson, S.M. 2019. Do precipitation extremes drive growth and migration timing of a Pacific salmonid fish in Mediterranean-climate streams? Ecosphere 10: e02618.

Leidy, R.A., Ryan, R., Moidu, H., Rodríguez-Lozano, P., Bogan, M.T., and Carlson, S.M. 2019. Observations of Foothill yellow-legged frog predation by a native frog, snake, and giant water bug in a Central California intermittent stream. Western North American Naturalist 79(2): 280-284.

Moland, E., Carlson, S.M., Villegas-Ríos, D., Wiig, J.R., and Olsen, E.M. 2019. Harvest selection on multiple traits in the wild revealed by aquatic animal telemetry. Ecology and Evolution 9: 6480-6491. https://doi.org/10.1002/ece3.5224. (cover photograph)

Palmer, M*. & A. Ruhi* (2019) [*equal contribution]. Linkages between flow regime, biota, and ecosystem processes: implications for river restoration. Science, 365(6459):eaaw2087.

Radinger, J., Britton, J.R., Carlson, S.M., Magurran, A.E., Alcaraz-Hernández, J.D., Almodóvar, A., Benejam, L., Fernández-Delgado, C., Nicola, G.G., Oliva-Paterna, F.J., Torralva, M., and García-Berthou, E. 2019. Effective monitoring of freshwater fish. Fish and Fisheries 20: 729-747.

Rodríguez-Lozano, P., Leidy, R.A., Carlson, S.M. 2019. Brook lamprey survival in the dry riverbed of an intermittent stream. Journal of Arid Environments 166: 83-85.

Ruhi, A., Cross, W., Catford, J., Escoriza, D. & J.D. Olden (2019). Understanding the nexus between hydrological alteration and biological invasions. In: Sabater, S., Elosegi, A. & R. Ludwig (Eds), Multiple Stressors in River Ecosystems. Elsevier.

Sabo, J.L., Holtgrieve, G.W., Ruhi, A., Arias, M.E., Ngor, P.B., Elliott, V., Räsänen, T.A. & S. Nam (2019). Response to Comment on “Designing river flows to improve food security futures in the Lower Mekong Basin”. Science, 364(6444):eaav9887.

Siepielski, A.M., Morrissey, M.B., Carlson, S.M., Francis, C.D., Kingsolver, J.G., Whitney, K.D., Kruuk, L.E.B. 2019. No evidence that warmer temperatures are associated with selection for smaller body sizes. Proceedings of the Royal Society B: 20191332. No evidence that warmer temperatures are associated with selection for smaller body sizes.

Shumilova and 75 co-authors (including 4 co-authors from the Carlson Lab: Bogan, M.T., Carlson, S.M., Hwan, J.L., Woelfle-Erskine, C.). 2019. Simulating rewetting events in intermittent rivers and ephemeral streams: a global analysis of leached nutrients and organic matter. Global Change Biology 25: 1591-1611.

Sturrock, A.M., Satterthwaite, W., Yoshida, K.M., Huber, E.R., Sturrock, H.J.W., Nusslé, S., Carlson, S.M. 2019. Eight decades of hatchery salmon releases in the California Central Valley: Factors influencing straying and resilience. Fisheries 44: 433-444.

Tonkin, J.D., Poff, N.L., Bond, N.R., Horne, A., Merritt, D.M., Reynolds, L.V., Olden, J.D., Ruhi, A. & Lytle, D.A., 2019. Prepare river ecosystems for an uncertain future. Nature, 570(7761):301.

Von Schiller and 90 co-authors (including 4 co-authors from the Carlson Lab: Bogan, M.T., Carlson, S.M., Hwan, J.L., Woelfle-Erskine, C.). 2019. Sediment respiration pulses in intermittent rivers and ephemeral streams. Global Biogeochemical Cycles 33: 1251-1263.

Wilkins, L.G.E., Matthews, K.R., Steel, Z.L., Nussle, S.C., and Carlson, S.M. 2019. Population dynamics of Rana sierrae at Dusy Basin: influence of non-native predators, drought, and restoration potential. Ecosphere 10: e02951.

Wilson, H., Bodwitch, H., Carah, J., Danne, K., Getz, C., Grantham, T.E. & Butsic, V. 2019. First known survey of cannabis production practices in California. California Agriculture 73: 119-127

2018

Bogan, M.T. and Carlson, S.M. 2018. Diversity and phenology of stoneflies (Plecoptera) from intermittent and perennial streams in Pinnacles National Park, California, U.S.A. Illiesia 14(08): 144-154.

Fernando, N., Morrison, R.R., Annis, A. & Grantham, T.E. 2018. Hydrologic scaling for hydrogeomorphic floodplain mapping: Insights into human‐induced floodplain disconnectivity. River Research and Applications 34:675-685.

Datry, T. and 94-co-authors (including 4 co-authors from the Carlson Lab: Bogan, M.T., Carlson, S.M., Hwan, J.L., Woelfle-Erskine, C.). 2018. A global analysis of terrestrial plant litter dynamics in non-perennial waterways. Nature Geoscience 11: 497-503.

Grantham, T.E. 2018. North Coast Summary Report. California’s Fourth Climate Change Assessment. Publication number: SUM-CCC4A-2018-001.

Grantham, T.E., Carlisle, D.M., McCabe, G.J. & Howard, J.K. 2018. Sensitivity of streamflow to climate change in California. Climatic Change 149:427-441

Herbold, B., Carlson, S.M., Henery, R., Johnson, R., Mantua, N., McClure, M., Moyle, P., and Sommer, T. 2018. Managing for salmon resilience in California’s variable and changing climate. San Francisco Estuary and Watershed Science 16(2): article 3.

Holtgrieve, G.W., Arias, M.E., Ruhi, A., Elliott, V., Nam, S., Ngor, P.B., Räsänen, T.A.  & J.L. Sabo (2018). Response to Comments on “Designing river flows to improve food security futures in the Lower Mekong Basin”. Science, 361(6398):p.eaat1477.

Howard, J.K., Fesenmyer, K.A., Grantham, T.E., Viers, J.H., Ode, P.R.., Moyle, P.B., Kupferburg, S.J., Furnish, J.L., Rehn, A., Slusark, J. & Mazor, R.D. 2018. A freshwater conservation blueprint for California: prioritizing watersheds for freshwater biodiversity. Freshwater Science 37:417-431.

Hwan, J.L., Fernández-Chacón, A., Buoro, M., and Carlson, S.M. 2018. Dry season survival of juvenile salmonids in an intermittent coastal stream. Canadian Journal of Fisheries and Aquatic Sciences 75: 746-758.

Kendy, E., Aylward, B., Ziemer, L.S., Richter, B. D., Colby, B.G., Grantham, T.E., Sanchez, L., Dicharry, W.B., Powell, E.M., Martin, S. & Culp, P.W. 2018. Water transactions for streamflow restoration, water supply reliability, and rural economic vitality in the western United States. JAWRA Journal of the American Water Resources Association 54: 487-504

Kominoski, J.S., Ruhi, A., Hagler, M.M., Petersen, K., Sabo, J.L., Sinha, T., Arumugam, S. & J.D. Olden (2018). Patterns and drivers of fish extirpations in rivers of the American Southwest and Southeast. Global Change Biology, 24(3):1175–1185.

Marshall, J.C., Acuna, V., Allen, D.C., Bonada, N., Boulton, A.J., Carlson, S.M., Dahm, C.N., Datry, T., Leigh, C., Negus, P., Richardson, J.S., Sabater, S., Stevenson, J., Steward, A.L., Stubbington, R., Tockner, K., and Vander Vorste, R. 2018. Letter: Protecting U.S. temporary waterways. Science 361: 856-857.

Mor, J.R., Ruhi, A., Muñoz, I., Tornés, E., Acuña, V., & S. Sabater (2018). Dam regulation and riverine food-web structure in a Mediterranean river. Science of the Total Environment, 625:301-310.

Morais, P., Dias, E., Cerveira, I., Carlson S.M., Johnson, R.C., and Sturrock A.M. 2018. How scientists reveal the secret migrations of fish. Frontiers for Young Minds 6:67. doi: 10.3389/frym.2018.00067

Palmer, M. & A. Ruhi (2018). Measuring Earth’s rivers. Science, 361(6402):546-547.

Ruhi, A., Messager, M. & J.D. Olden (2018). Tracking the pulse of the Earth’s fresh waters. Nature Sustainability, 1(4):198–203.

Ruhi, A., Dong, X., Holt, C., Batzer, D.P. & J.L. Sabo (2018). Detrimental effects of a novel flow regime on the functional trajectory of an aquatic invertebrate metacommunity. Global Change Biology, 24(8):3749-3765.

Sabo, J.L., Caron, M., Doucett, R., Dibble, K., Ruhi, A., Marks, J.C., Hungate, B & T.A. Kennedy (2018). Pulsed flows, tributary inputs, and food-web structure in a highly regulated river. Journal of Applied Ecology, 55(4):1884-1895.

Siepielski, A.M., Morrissey, M.B., Buoro, M., Carlson, S.M., Caruso, C.M., Clegg, S.M., Coulson, T., DiBattista, J., Gotanda, K.M., Francis, C.D., Hereford, J., Kingsolver, J.G., Augustine, K.E., Kruuk, L.E.B., Martin, R.A., Sheldon, B.C., Sletvold, N., Svensson, E.I., Wade, M.J., and MacColl, A.D.C. 2018. Response to Comment on Precipitation drives global variation in natural selection. Science, eaan5760 (online only).

2017

Acuña, V., Hunter, M. & A. Ruhi (2017). Managing temporary streams and rivers as unique rather than second-class ecosystems. Biological Conservation, 211(B):12-19.

Bogan, M.T., Chester, E., Datry, T., Murphy, A., Robson, B., Ruhi, A. & J. Whitney (2017). Resistance, Resilience, and Community Recovery in Intermittent Rivers and Ephemeral Streams. In: Datry, T., Bonada, N. & A. Boulton (Eds), Intermittent Rivers and Ephemeral Streams: Ecology and Management. Elsevier.

Bogan, M.T., Hwan, J.L., Cervantes-Yoshida, K., Ponce, J., and Carlson, S.M. 2017. Aquatic invertebrate communities exhibit both resistance and resilience to seasonal drying in an intermittent coastal stream. Hydrobiologia 799: 123-133.

Boix, D., Caria, M.C., Gascón, S., Mariani, M.A., Sala, J., Ruhi, A., Compte, J. & S. Bagella (2017). Contrasting intra-annual patterns of six biotic groups with different dispersal mode and ability in Mediterranean temporary wetlands. Marine and Freshwater Research, 68, 1044-1060.

Bonada, N., Carlson, S.M., Datry, T., Finn, D., Leigh, C., Lytle, D.A., Monaghan, M.T., and Tedesco, P.A. 2017. Genetic, evolutionary, and biogeographical processes in intermittent and ephemeral streams. In Intermittent River Ecology and Management, edited by T. Datry, A. Boulton, N. Bonada. Elsevier.

Carlisle, D.M., Grantham, T.E., Eng, K. & Wolock, D.M. 2017. Biological relevance of streamflow metrics: regional and national perspectives. Freshwater Science 36:927-940.

Carlson, S.M. 2017. Comment: Synchronous timing of food resources trigger bears to switch from salmon to berries. Proceedings of the National Academy of Sciences USA 114: 10309-10311.

Caruso, C.M., Martin, R.A., Sletvold, N., Morrissey, M.M., Wade, M.J., Augustine, K.E., Carlson, S.M., MacColl, A.D.C., Siepielski, A.M., Kingsolver, J.G. 2017. What are the environmental determinants of phenotypic selection? A meta-analysis of experimental studies. American Naturalist 190(3): 363-376.

Cid, N., Bonada, N., Carlson, S.M., Grantham, T.E., Gasith, A. & Resh, V.H. 2017. High variability is a defining component of Mediterranean-climate rivers and their biota. Water 9:1-52.

Datry, T., Bonada, N., Corti, R., Heino, J., Hugueny, B., Rolls. R & A. Ruhi (2017). Habitat Fragmentation and Metapopulation, Metacommunity, and Metaecosystem Dynamics in Intermittent Rivers and Ephemeral Streams. In: Datry, T., Bonada, N. & A. Boulton (Eds.), Intermittent Rivers and Ephemeral Streams: Ecology and Management. Elsevier.

Dong, X., Ruhi, A. & N.B. Grimm (2017). Evidence for self-organization in determining spatial patterns of stream nutrients, despite primacy of the geomorphic template. Proceedings of the National Academy of Sciences of the USA, 114(24):4744–4752.

Eng, K., Grantham, T.E., Carlisle, D.M. & Wolock, D.M. 2017. Predictability and selection of hydrologic metrics in riverine ecohydrology. Freshwater Science 36:915-926.

Fraiola, K.M.S. and Carlson, S.M. 2017. Feeding microhabitat use and selectivity of juvenile Mugil cephalus (Actinopterygii: Mugilidae) in a Hawaiian stream. Pacific Science 71(1): 45-56.

Hovel, R.A., Carlson, S.M., and Quinn, T.P. 2017. Climate change alters the reproductive phenology and investment of a lacustrine fish, the threespine stickleback. Global Change Biology 23: 2308–2320.

Nussle, S., Matthews, K.R., and Carlson, S.M. 2017. Patterns and dynamics of vegetation recovery following grazing cessation in the California golden trout habitat. Ecosphere 8(7): e01880.

Rosset, B., Ruhi, A., Bogan, M.T. & T. Datry (2017). Do lentic and lotic communities respond similarly to drying? Ecosphere, 8(7):e01809.

Ruhi, A., Datry, T. & J.L. Sabo (2017). Interpreting beta diversity components over time to conserve metacommunities in highly-dynamic ecosystems. Conservation Biology, 31(6):1459-1468.

Sabo, J.L., Ruhi, A., Elliot, V., Arias, M., Holtgrieve, G. & N. So (2017). Designing river flows to improve food security futures in the Lower Mekong Basin. Science, 358(6368):eaao1053.

Sankarasubramanian, A., Sabo, J. L., Larson, K., Seo, S., Sinha, T., Bhowmik, R., Ruhi, A., Kunkel, K., Mahinthakumar, G., Berglund, E. & J. Kominoski (2017). Synthesis of public water supply use in the U.S.: Spatio-temporal patterns and socio-economic controls. Earth’s Future, 5(7):771-788.

Satterthwaite, W.H., Carlson, S.M., and Criss, A. 2017. Ocean size and corresponding life history diversity among the four run timings of California Central Valley Chinook salmon. Transactions of the American Fisheries Society 146: 594–610.

Schaaf, C.J., Kelson, S.J., Nussle, S., and Carlson, S.M. 2017. Black spot infection in juvenile steelhead trout increases with stream temperature in northern California. Environmental Biology of Fishes 100:733–744.

Siepielski, A.M., Morrissey, M.B., Buoro, M., Carlson, S.M., Caruso, C.M., Clegg, S.M., Coulson, T., DiBattista, J., Gotanda, K.M., Francis, C.D., Hereford, J., Kingsolver, J.G., Augustine, K.E., Kruuk, L.E.B., Martin, R.A., Sheldon, B.C., Sletvold, N., Svensson, E.I., Wade, M.J., and MacColl, A.D.C. 2017. Precipitation drives global variation in natural selection. Science 355: 959-962.

Woelfle-Erskine, C., Larsen, L.G., and Carlson, S.M. 2017. Abiotic habitat thresholds for salmonid over-summer survival in intermittent streams. Ecosphere 8(2):e01645.

Zimmerman, J.K., Carlisle, D.M., May, J.T., Klausmeyer, K.R., Grantham, T.E., Brown, L.R., & Howard, J.K. 2017. Patterns and magnitude of flow alteration in California, USA. Freshwater Biology 37:417-431.

2016

Carlisle, D.M., Wolock, D.M., Howard, J.K., Grantham, T.E., Fesenmyer, K. & Wieczorek, M. 2016. Estimating natural monthly streamflows in California and the likelihood of anthropogenic modification. US Geological Survey Open File Report 2016-1189.

Compte, J., Montenegro, M., Ruhi, A., Gascón, S., Sala, J. & D. Boix (2016). Microhabitat selection and diel patterns of zooplankton in a Mediterranean temporary pond Hydrobiologia, 766(1):201-213.

Escoriza, D. & A. Ruhi (2016). Functional distance to recipient communities may favour invasiveness: insights from two invasive frogs. Diversity and Distributions, 22(5):519-533.

Fraiola, K.M.S. and Carlson, S.M. 2016. Feasibility of using Passive Integrated Transponder technology for studying the ecology of juvenile Mugil cephalus (Actinopterygii, Mugilidae) in streams. Pacific Science 70(3): 349-360.

Gascón, S., Arranz, I. Cañedo-Argüelles, M., Nebra, A., Ruhi, A., Rieradevall, M., Caiola, N., Sala, J., Ibàñez, C., Quintana, XD. & D. Boix (2016). Environmental filtering determines metacommunity structure in wetland microcrustaceans. Oecologia, 181(1):193-205.

Grantham, T.E., Fesenmyer, K., Peek, R., Holmes, E., Viers, J.H., Quiñones, R., Bell, A., Howard, J. & Moyle P.B. Missing the boat on freshwater ecosystem conservation in California. 2016. Conservation Letters 10:77-85.

Huerta, B., Rodriguez-Mozaz S., Nannou C., Nakis L., Ruhi A., Acuña V., Sabater, S. & D. Barcelo (2016). Determination of a broad spectrum of pharmaceuticals and endocrine disruptors in biofilm from a WWTP-impacted river. Science of the Total Environment, 540:241-249.

Hwan, J.L. and Carlson, S.M. 2016. Fragmentation of an intermittent stream during seasonal drought: intra-annual and interannual patterns and biological consequences. River Research and Applications 32(5): 856-870.

Kingsolver, J.G., Diamond, S.E., Siepielski, A.M., and Carlson, S.M. 2016. Commentary: Errors in meta-analyses of selection. Journal of Evolutionary Biology 29: 1905-1906.

Leidy, R.A., Bogan, M.T., Neuhaus, L., Rosetti, L. and Carlson, S.M. 2016. Summer die-off of western pond turtle (Actinemys marmorata) along an intermittent coast range stream in central California. Southwestern Naturalist 61(1): 71-74.

Nusslé, S., Hendry, A.P., Carlson, S.M. 2016. Spotlight: When should harvest evolution matter to population dynamics? Trends in Ecology and Evolution 31(7): 500-502.

Ruhi, A., Olden, J. & J.L. Sabo (2016). Declining streamflow induces collapse and replacement of native fish in the American Southwest. Frontiers in Ecology and the Environment, 14(9):1-8.

Ruhi, A., Muñoz, I., Tornés, E., Batalla, R.J., Vericat, D., Ponsatí, L., Acuña, V., von Schiller, D., Marcé, R., Bussi, G., Francés, F. & S. Sabater (2016). Flow regulation increases food‐chain length through omnivory mechanisms in a Mediterranean river network. Freshwater Biology, 61(9):1536-1549.

Ruhi, A., Acuña, V., Barceló, D., Huerta, B., Mor, J.R., Rodríguez, S. & S. Sabater (2016). Bioaccumulation and trophic magnification of pharmaceuticals and endocrine disruptors in a Mediterranean river food web. Science of the Total Environment, 540: 250-259.

Sánchez-Montoya, M., von Schiller, D., Ruhi, A., Sting Pechar, G., Proia, L., Miñano, J., Vidal-Abarca, R.R., Suárez, M.L., & K. Tockner (2016). Responses of ground-dwelling arthropods to surface flow drying in channels and adjacent habitats along Mediterranean streams. Ecohydrology, 9(7):1376–1387.

2015

Arranz, I., Sala, J., Gascón, S., Ruhi, A., Quintana, X.D., Amoedo, J., Martinoy, M. & D Boix (2015). Contribution to the knowledge of the distribution of Chaoborus species (Diptera: Chaoboridae) in NE Iberian Peninsula, with notes on the spatial and temporal segregation among them. Limnetica, 34:57-68.

Bogan, M.T., Hwan, J.L., and Carlson, S.M. 2015. High aquatic biodiversity in an intermittent coastal headwater stream at Golden Gate National Recreation Area, California. Northwest Science 89: 188-197.

Carah, J.K., Howard, J.K., Thompson, S.E., Short Gianotti, A.G., Bauer, S.D., Carlson, S.M., Gabriel, M.W., Dralle, D.N., Hulette, L.L., Johnson, B.J., Knight, C.A., Kupferberg, S.J., Martin, S.L., Naylor, R.L., and Power, M.E. 2015. High time for conservation: Adding the environment to the debate on marijuana liberalization. BioScience 65: 822-829.

Cervantes-Yoshida, K., Leidy, R.A., and Carlson, S.M. 2015. Contemporary land change alters fish communities in a San Francisco Bay watershed, California. PLoS ONE 10(11): e014170.

Fey, S.B., Siepielski, A.M., Nusslé, S., Cervantes-Yoshida, K., Hwan, J.L., Huber, E.R., Fey, M.J., Catenazzi, A., and Carlson, S.M. 2015. Recent shifts in the occurrence, cause, and magnitudes of animal mass mortality events. Proceedings of the National Academy of Sciences USA 112: 1083-1088.

Howard, J.K, Klausmeyer, K.R., Fesenmyer, K.A., Furnish, J., Gardali, T., Grantham, T.E. et al. 2015. Patterns of freshwater species diversity, endemism, and vulnerability in California. PLoS ONE 10:e0130710.

Huber, E.R. and Carlson, S.M. 2015. Temporal trends in hatchery releases of fall-run Chinook salmon in California’s Central Valley. San Francisco Estuary and Watershed Sciences 13(2): article 3.

Huerta, B., Jakimska, A., Llorca, M., Ruhi, A., Margaoutidis, G., Acuña, V., Sabater, S., Rodriguez-Mozaz, S. & D. Barceló (2015). Development of an analytical method for the determination of multi-class pharmaceuticals and endocrine disruptors in freshwater invertebrates. Talanta, 132:373-381.

Nusslé, S., Matthews, K.R., and Carlson, S.M. 2015. Mediating water temperature increases due to livestock and global change in high elevation meadow streams of the Golden Trout Wilderness. PLoS ONE 10(11): e0142426.

Poff, N.L., Brown, C., Grantham, T.E., Matthews, J., Palmer, M. et al. 2015. Sustainable water management under future uncertainty with eco-engineering decision scaling. Nature Climate Change 2765:25-34.

Power, M.E., Bouma-Gregson, K., Higgins, P., and Carlson, S.M. 2015. The thirsty Eel: summer and winter flow thresholds that tilt the Eel River of northwestern California from salmon-supporting to cyanobacterially-degraded states. Copeia 2015: 200-211.

Ruhi, A., Holmes, E., Rinne, J. & J.L. Sabo (2015). Anomalous droughts, not invasion, decrease persistence of native fishes in a desert river. Global Change Biology, 21(4):1482-1496.

Satterthwaite, W.H. and Carlson, S.M. 2015. Weakening portfolio effect strength in a hatchery-supplemented Chinook salmon population complex. Canadian Journal of Fisheries and Aquatic Sciences 72: 1860-1875.

2014

Buoro, M. and Carlson, S.M. 2014. Life-history syndromes: integrating dispersal through space and time. Ecology Letters 17: 756-767.

Carlson, S.M., Cunningham, C., and Westley, P.A.H. 2014. Evolutionary rescue in a changing world. Trends in Ecology and Evolution 29: 521-530.

Escoriza, D. & A. Ruhi (2014). Macroecological patterns of amphibian assemblages in the Western Palearctic: Implications for conservation. Biological Conservation, 176:252-261.

Grantham, T.E., Viers, J.H. & Moyle, P.B. 2014. Systematic screening of dams for environmental flow assessment and implementation. BioScience 64:1006-1018.

Grantham, T.E. & Viers, J.H. 2014. 100 years of California’s water rights system: patterns, trends and uncertainty. Environmental Research Letters 9:1-10.

Grantham, T.E., Mezzatesta, M., Newburn, D. & Merenlender, A. 2014. Evaluating tradeoffs between environmental flow protections and agricultural water security. River Research and Applications 30:315-328.

Quiñones, R.M., Grantham, T.E., Harvey, B.N., Kiernan, J.D., Klasson, M., Wintzer, A.P. & Moyle, P.B. 2014. Dam removal and anadromous salmonid (Oncorhynchus spp.) conservation in California. Reviews in Fish Biology 1-21.

Rouissi, M., Boix, D., Muller, S.D., Gascón, S., Ruhi, A., Sala, J., Bouattour, A., Ben Haj Jilani, I., Ghrabi-Gammar, Z., Ben Saad-Limam, S. & A. Daoud-Bouattour (2014). Spatio-temporal variability of faunal and floral assemblages in Mediterranean temporary wetlands. Comptes Rendus Biologies, 337(12):695-708.

Ruhi, A., Chappuis, E., Escoriza, D., Jover, M., Sala, J., Boix, D., Gascón, S. & E. Gacia (2014). Environmental filtering determines community patterns in temporary wetlands – a multi‑taxon approach. Hydrobiologia, 723(1):25-39.

Ruhi, A. & D. Batzer (2014). Assessing congruence and surrogacy among wetland macroinvertebrate taxa towards efficiently measuring biodiversity. Wetlands, 34(6):1061-1071.

Satterthwaite, W.H., Carlson, S.M., Allen-Moran, S.D., Vincenzi, S., Bograd, S.J., and Wells, B.K. 2014. Match-mismatch dynamics and the relationship between ocean-entry timing and relative recovery rates of Central Valley fall run Chinook salmon. Marine Ecology Progress Series 511: 237-248.

2013

Batzer, D. & A. Ruhi (2013). Is there a core set of organisms that structure invertebrate assemblages in freshwater wetlands? Freshwater Biology, 58(8):1647-1659.

Grantham, T.E., de Figueroa, R. & Prat, N. 2013. Water management in mediterranean rivers: a multiregional assessment of physical impacts, ecological responses, and management strategies. Hydrobiologia 719:451-482.

Grantham, T.E. 2013. Use of hydraulic modelling to assess passage flow connectivity for salmon in streams. River Research and Applications 29:250-267.

Kondolf, G.M., Podolak, K. & Grantham, T.E. 2013. Restoring Mediterranean-climate rivers. Hydrobiologia 719:527-545.

Resh, V.H., Bêche, L., Lawrence, J., Mazor, R., McElravy, E.P., O’Dowd, A.P., Rudnick, D., and Carlson, S.M. 2013. Long-term population and community patterns of benthic macroinvertebrates and fishes in northern California Mediterranean-climate streams. Hydrobiologia 719: 93-118.

Ruhi, A., Boix, D., Sala, J., Gascón, S. & X.D. Quintana (2013). Nestedness and successional trajectories of macroinvertebrate assemblages in created wetlands. Oecologia, 171(2):545-556.

Ruhi, A., Boix, D., Gascón, S., Sala, J. & D. Batzer (2013). Functional and phylogenetic relatedness in temporary wetland invertebrates: current macroecological patterns and implications for future climatic change scenarios. PLOS One, 8(11):e81739.

Siepielski, A.M., Gotanda, K., Morrissey, M., Diamond, S.E., DiBattista, J.D., and Carlson, S.M. 2013. The spatial patterns of directional phenotypic selection. Ecology Letters 16: 1382-1392.

Tornés, A. & A. Ruhi (2013). Flow intermittency decreases nestedness and specialization of diatom communities in Mediterranean rivers. Freshwater Biology, 58(12):2555-2566.

2012

Boix, D., Ruhi, A., Gascón, S. & J. Sala (2012). First record of Holocentropus stagnalis (Albarda, 1874) (Trichoptera: Polycentropodidae) for the Iberian Peninsula. Boletín de la Sociedad Entomológica Aragonesa, 51:343‒345.

Cañedo-Argüelles, Grantham, T.E., Perrée, I., Rieradevall, M., Prat, N., Céspedes-Sánchez, R. & Martín Alonso, J. 2012. El mesocosmos Sostaqua: recreación de un ecosistema fluvial bajo condiciones experimentales controladas. Tecnología del Agua 344-345: 8-54.

Cañedo-Argüelles, Grantham, T.E., Perrée, I., Céspedes-Sánchez, R., Rieradevall, M. & Prat, N. 2012. Stream invertebrate community responses to salinization: a mesocosm approach. Environmental Pollution 166:144-151.

Grantham, T.E., Newburn, D.A., McCarthy, M.A. & Merenlender, A.M. 2012. The role of stream flow and land use in limiting over-summer survival of juvenile steelhead trout in California streams. Transactions of the American Fisheries Society 141:585-598.

Grantham, T.E., Perrée, I., Cañedo-Argüelles, M., Rieradevall, M. & Prat, N. 2012. A mesocosm approach for detecting stream invertebrate community responses to treated wastewater effluent. Environmental Pollution 160:95-102.

Kingsolver, J.G., Diamond, S.E., Siepielski, A.M., and Carlson, S.M. 2012. Synthetic analyses of phenotypic selection in natural populations: lessons, limitations and future directions. Evolutionary Ecology 26: 1101-1118.

Moore, J.W., Carlson, S.M., Twardochleb, L., Hwan, J.L., Fox, J.M., Hayes, S.A. 2012. Trophic tangles through time? Opposing direct and indirect effects of an invasive omnivore on stream ecosystem processes. PLoS ONE 7: e50687.

Moore, J.W., Herbst, D.B., Heady, W., and Carlson, S.M. 2012. Stream community and ecosystem responses to the boom and bust of an invading snail. Biological Invasions 14: 2435-2446.

Ruhi, A., Herrmann, J., Gascón, S., Sala, J., Geijer, J. & D. Boix (2012). Change in biological traits and community structure of macroinvertebrates through primary succession in a man-made Swedish wetland. Freshwater Science, 31(1):22-37.

Ruhi, A., San Sebastian, O., Feo, C., Franch, M., Gascón, S., Richter-Boix, À., Boix, D. & G. Llorente (2012). Man-made Mediterranean Temporary Ponds as a tool for amphibian conservation.Annales de Limnologie – International Journal of Limnology, 48(1):81-93.

Ruhi, A., Herrmann, J., Gascón, S., Sala, J. & D. Boix (2012). How do early successional patterns in man-made wetlands differ between cold temperate and Mediterranean regions? Limnologica, 42(4):328-339.

2011

Anderson, J.A., Ward, E.J., and Carlson, S.M. 2011. A model for estimating the minimum number of offspring to sample in studies of reproductive success. Journal of Heredity 102: 567-576.

Carlson, S.M., Quinn, T.P., and Hendry, A.P. 2011. Eco-evolutionary dynamics in Pacific salmon. Heredity 106: 438-447.

Carlson, S.M., and Satterthwaite, W.H. 2011. Weakened portfolio effect in a collapsed salmon population complex. Canadian Journal of Fisheries and Aquatic Sciences 68: 1579-1589.

Leidy, R.A., Cervantes-Yoshida, K., and Carlson, S.M. 2011. Persistence of native fishes in small streams of the urbanized San Francisco Estuary, California: acknowledging the role of urban streams in native fish conservation. Aquatic Conservation: Marine and Freshwater Ecosystems 21: 472-483.

Siepielski, A.M., DiBattista, J.D., Evans, J.A., and Carlson, S.M. 2011. Differences in the temporal dynamics of phenotypic selection among fitness components in the wild. Proceedings of the Royal Society B 277: 1572-1580.

2010

Carlson, S.M., Kottas, A., and Mangel, M. 2010. Bayesian analysis of size-dependent over-winter mortality from size-frequency distributions. Ecology 91: 1016-1024.

Darimont, C.T., Bryan, H.M., Carlson, S.M., Hocking, M.D., MacDuffee, M. Paquet, P.C., Price, M.H.H., Reimchen, T.E., Reynolds, J.D., and Wilmers, C.C. 2010. Salmon for terrestrial protected areas. Conservation Letters 3: 379-389.

Grantham, T.E., Merenlender, A. M. & Resh, V.H. 2010. Climatic influences and anthropogenic stressors: an integrated framework for stream-flow management in mediterranean-climate California, USA. Freshwater Biology 55(S1):184-200.

2009

Carlson, S.M., Rich, H.B., and Quinn, T.P. 2009. Does variation in selection imposed by bears drive divergence among populations in the size and shape of sockeye salmon? Evolution 63: 1244-1261.

Darimont, C.T., Carlson, S.M., Kinnison, M.T., Paquet, P.C., Reimchen, T.E., and Wilmers, C.C. 2009. Letter: Reply to Koons: Harvest-related trait changes in an increasingly variable world. Proceedings of the National Academy of Sciences 106: E33.

Darimont, C.T., Carlson, S.M., Kinnison, M.T., Paquet, P.C., Reimchen, T.E., and Wilmers, C.C. 2009. Human predators outpace other agents of trait change in the wild. Proceedings of the National Academy of Sciences 106: 952-954.

Kinnison, M.T., Palkovacs, E.P., Darimont, C.T., Carlson, S.M., Paquet, P.C., and Wilmers, C.C. 2009. Letter: Some cautionary notes on fisheries evolutionary impact assessments. Proceedings of the National Academy of Sciences 106: E115.

Olsen, E.M., Carlson, S.M., Gjøsæter, J., and Stenseth, N.C. 2009. Nine decades of decreasing phenotypic variability in Atlantic cod. Ecology Letters 12: 622-631.

Quinn, T.P., Carlson, S.M., Gende, S.M., and Rich, H.B. 2009. Transportation of Pacific salmon carcasses from streams to riparian forests by bears. Canadian Journal of Zoology 87: 195-203.

Ruhi, A., D. Boix, J. Sala, S. Gascón & X. D. Quintana (2009). Spatial and temporal patterns of pioneer macrofauna in recently created ponds: taxonomic and functional approaches. Hydrobiologia, 634(1):137-151.

Siepielski, A.M., DiBattista, J.D., and Carlson, S.M. 2009. It’s about time: the temporal dynamics of phenotypic selection in the wild. Ecology Letters 12: 1261-1276.

2008

Carlson, S.M., and Stenseth, N.C. 2008. Commentary: Fishery selection across the millennia. Proceedings of the Royal Society B 275: 2657-2658.

Carlson, S.M., Olsen, E.M., and Vøllestad, L.A. 2008. Seasonal mortality and the effect of body size: a review and an empirical test using individual data on brown trout. Functional Ecology 22: 663-673.

Carlson, S.M., and Seamons, T.R. 2008. A review of quantitative genetic components of fitness in salmonids: implications for adaptation to future change. Evolutionary Applications 1: 222-238.

McClure, M.M., Carlson, S.M., Beechie, T.J., Pess, G.R., Jorgenson, J.C., Sogard, S.M., Sultan, S.E., Holzer, D.M., Travis, J., Sanderson, B.L., Power, M.E., and Carmichael, R.W. 2008. Evolutionary consequences of habitat loss for Pacific anadromous salmonids. Evolutionary Applications 1: 300-318.

Westley, P.A.H., Carlson, S.M., and Quinn, T.P. 2008. Among-population variation in adipose fin size parallels the expression of other secondary sexual characteristics in sockeye salmon (Oncorhynchus nerka). Environmental Biology of Fishes 81: 439-446.

2007

Carlson, S.M., Hilborn, R., Hendry, A.P., and Quinn, T.P. 2007. Predation by bears drives senescence in natural populations of salmon. PLoS ONE 2: e1286.

Carlson, S.M., and Quinn, T.P. 2007. Ten years of varying lake level and selection on size-at-maturity in sockeye salmon. Ecology 88: 2620-2629.

Carlson, S.M., Edeline, E., Vøllestad, L.A., Haugen, T.O., Winfield, I.J., Fletcher, J.M., James, J.B., and Stenseth, N.C. 2007. Four decades of opposing natural and human-induced artificial selection acting on Windermere pike (Esox lucius). Ecology Letters 10: 512-521.

Carlson, S.M., Hendry, A.P., and Letcher, B.H. 2007. Growth rate differences between resident native brook trout and non-native brown trout. Journal of Fish Biology 71: 1430-1447.

Edeline, E., Carlson, S.M., Stige, L.C., Winfield, I.J., Fletcher, J.M., James, J.B., Haugen, T.O., Vøllestad, L.A., and Stenseth, N.C. 2007. Trait changes in a harvested population are driven by a dynamic tug-of-war between natural and harvest selection. Proceedings of the National Academy of Sciences 104: 15799-15804.

2006

Johnson, S.P., Carlson, S.M., and Quinn, T.P. 2006. Tooth size and skin thickness in mature sockeye salmon: evidence for habitat constraints and variable investment between the sexes. Ecology of Freshwater Fish 15: 331-338.

Rich, H.B., Carlson, S.M., Chasco, B.E., Briggs, K.C., and Quinn, T.P. 2006. Movements of male sockeye salmon, Oncorhynchus nerka, on spawning grounds: effects of in-stream residency, density and body size. Animal Behaviour 71: 971-981.

2004

Carlson, S.M., Rich, H.B., and Quinn, T.P. 2004. Reproductive life-span and sources of mortality for alternative male life-history strategies in sockeye salmon, Oncorhynchus nerka. Canadian Journal of Zoology 82: 1878-1885.

Carlson, S.M., Hendry, A.P., and Letcher, B.H. 2004. Natural selection acting on body size, growth rate and compensatory growth: an empirical test in a wild trout population. Evolutionary Ecology Research 6: 955-973.

Stewart, I.A., Carlson, S.M., Boatright, C.P., Buck, G.B., and Quinn, T.P. 2004. Site fidelity of spawning sockeye salmon (Oncorhynchus nerka W.) in the presence and absence of olfactory cues. Ecology of Freshwater Fish 13: 104-110.

2003

Carlson, S.M., and Letcher, B.H. 2003. Variation in brook and brown trout survival within and among seasons, species, and age classes. Journal of Fish Biology 63: 780-794.