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Journals

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225. Béland, M., D. D. Baldocchi, J.-L. Widlowski, R. A. Fournier, and M. M. Verstraete (2014), On seeing the wood from the leaves and the role of voxel size in determining leaf area distribution of forests with terrestrial LiDAR, Agricultural and Forest Meteorology, 184(0), 82-97.

224. Chen, X., G. R. Miller, Y. Rubin, and D. D. Baldocchi (2012), A statistical method for estimating wood thermal diffusivity and probe geometry using in situ heat response curves from sap flow measurements, Tree Physiol., 32(12), 1458-1470.

223. Baldocchi, D.D. and Ma, S. 2013. How Will Land Use Affect Air Temperature in the Surface Boundary Layer?: Lessons Learned from a Comparative Study on the Energy Balance of an Oak Savanna and an Annual Grassland in California, USA. Tellus, B, 65, 19994, http://dx.doi.org/10.3402/tellusb.v65i0.19994.

222. Kobayashi, H., Ryu, Y., Baldocchi, D.D., Welles, J.M., Norman, J.M., 2013. On the correct estimation of gap fraction: How to remove scattered radiation in gap fraction measurements? Agricultural and Forest Meteorology 174–175, 170-183.

221. Vargas, R., Sonnentag, O., Abramowitz, G., Carrara, A., Chen, J., Ciais, P., Correia, A., Keenan, T., Kobayashi, H., Ourcival, J.-M., Papale, D., Pearson, D., Pereira, J., Piao, S., Rambal, S., Baldocchi, D., 2013. Drought Influences the Accuracy of Simulated Ecosystem Fluxes: A Model-Data Meta-analysis for Mediterranean Oak Woodlands. Ecosystems, 1-16.

220. Raz-Yaseef, N., Koteen, L., Verfaillie, J., Baldocchi, D. (2013) Root system structure of a water limited oak savanna estimated with a ground penetrating radar. Journal of Geophysical Research, Biogeosciences.

219. Koteen, L. and Baldocchi, D.D. (2012) A randomization method for efficiently and accurately processing fine roots, and separating them from debris, in the laboratory. Plant and Soil. 363:383–398.

218. Peichl, M., Sonnentag, O., Wohlfahrt, G., Flanagan, L.B., Baldocchi, D.D., Kiely, G., Galvagno, M., Gianelle, D., Marcolla, B., Pio, C., Migliavacca, M., Jones, M.B. Saunders, M. (2013) Convergence of potential net ecosystem production among contrasting C3 grassland. Ecology Letters. doi: 10.1111/ele.12075.

217. Ryu, Y., Verfaillie, J., Macfarlane, C., Kobayashi, H., Sonnentag, O., Vargas, R., Ma, S., Baldocchi, D.D., 2012. Continuous observation of tree leaf area index at ecosystem scale using upward-pointing digital cameras. Remote Sensing of Environment 126, 116-125.

216. Schwalm, C.R., Williams, C.A., Schaefer, K., Baldocchi, D., Black, T.A., Goldstein, A.H., Law, B.E., Oechel, W.C., Paw U, K.T., Scott, R.L., 2012. Reduction in carbon uptake during turn of the century drought in western North America. Nature Geosci 5, 551-556.

215. Baldocchi, D. 2012. Gas and energy fluxes across landscapes. In Encyclopedia of Theoretical Ecology. Eds. Alan Hastings and Lou Gross. University of California Press, Berkeley. Pp337-339

214. H. Yan, S.Q. Wang, D. Billesbach, W. Oechel, J.H. Zhang, T. Meyers, T.A. Martin, R. Matamala, D. Baldocchi, G. Bohrer, D. Dragoni, R. Scott. (2012) Global estimation of evapotranspiration using a leaf area index-based surface energy and water balance model. Remote Sensing of Environment 2012 124, doi:10.1016/j.rse.2012.06.004 . Pages 581-595

213. Williams, C. A., M. Reichstein, N. Buchmann, D. Baldocchi, C. Beer, C. Schwalm, G. Wohlfahrt, N. Hasler, C. Bernhofer, T. Foken, D. Papale, S. Schymanski, and K. Schaefer. 2012. Climate and vegetation controls on the surface water balance: Synthesis of evapotranspiration measured across a global network of flux towers. Water Resources Research 48:W06523.

212. Baldocchi, D. Reichstein, M, Papale, D, Koteen, L. Vargas, R. Agarwal, D., Cook, R. 2012. Role of Flux Networks in Biogeosciences. EOS. 93,217-218.

211. Hatala, J. A., M. Detto, and D. D. Baldocchi (2012), Gross ecosystem photosynthesis causes a diurnal pattern in methane emission from rice, Geophys. Res. Lett., 39(6), L06409.

210. Detto, M., A. Molini, G. Katul, P. Stoy, S. Palmroth, and D. Baldocchi (2012), Causality and Persistence in Ecological Systems: A Nonparametric Spectral Granger Causality Approach, The American Naturalist, 179, 524-535.

209. Ma, S., D. D. Baldocchi, J. A. Hatala, M. Detto, and J. Curiel Yuste. 2012. Are rain-induced ecosystem respiration pulses enhanced by legacies of antecedent photodegradation in semi-arid environments? Agricultural and Forest Meteorology 154–155:203-213.

208. Hatala, J. A., M. Detto, O. Sonnentag, S. J. Deverel, J. Verfaillie, and D. D. Baldocchi (2012), Greenhouse gas (CO2, CH4, H2O) fluxes from drained and flooded agricultural peatlands in the Sacramento-San Joaquin Delta, Agriculture, Ecosystems & Environment, 150(0), 1-18.

207. Ryu, Y., Baldocchi, D.D., Kobayashi, H.*, van Ingen, C., Li, J., Black, T.A., Beringer, J., van Gorsel, E., Knohl, A., Law, B.E., Richardson, A.D., Roupsard, O.. 2011. Integration of MODIS land and atmosphere products with a coupled-process model to estimate gross primary productivity and evapotranspiration from 1 km to global scales. Global Biogeochemical Cycles. 25 :GB4017

206. Ryu, Y., Baldocchi, D., Black, T.A., Detto, M.*, Law, B.E., Leuning, R., Miyata, A., Reichstein, M., Vargas, R., Ammann, C., Beringer, J., Flanagan, L.B., Gu, L., Hutley, L., Kim, J.,Harry McCaughey; Eddy Moors; Rambal, S., Vesala, T., Richardson, A.D. 2011. On the temporal upscaling of evapotranspiration from instantaneous remote sensing measurements to 8-day mean daily-sums. Agricultural and Forest Meteorology. 152:212-222.

205. Vargas R., Baldocchi D.D., Bahn M., Hanson P.J., Hosman K.P., Kulmala L., Pumpanen J. & Yang B. (2011) On the multi-temporal correlation between photosynthesis and soil CO2 efflux: reconciling lags and observations. New Phytologist. 191: 1006-1017

204. Kattge J., Díaz S., Lavorel S., Prentice I.C., Leadley P., Bönisch G., Garnier E., Westoby M., Reich P.B., Wright I.J., Cornelissen J.H.C., Violle C., Harrison S.P., van Bodegom P.M., Reichstein M., Enquist B.J., Soudzilovskaia N.A., Ackerly D.D., Anand M., Atkin O., Bahn M., Baker T.R., Baldocchi D., Bekker R., Blanco C.C., Blonder B., Bond W.J., Bradstock R., Bunker D.E., Casanoves F., Cavender-Bares J., Chambers J.Q., Chapin Iii F.S., Chave J., Coomes D., Cornwell W.K., Craine J.M., Dobrin B.H., Duarte L., Durka W., Elser J., Esser G., Estiarte M., Fagan W.F., Fang J., Fernández-Méndez F., Fidelis A., Finegan B., Flores O., Ford H., Frank D., Freschet G.T., Fyllas N.M., Gallagher R.V., Green W.A., Gutierrez A.G., Hickler T., Higgins S.I., Hodgson J.G., Jalili A., Jansen S., Joly C.A., Kerkhoff A.J., Kirkup D., Kitajima K., Kleyer M., Klotz S., Knops J.M.H., Kramer K., Kühn I., Kurokawa H., Laughlin D., Lee T.D., Leishman M., Lens F., Lenz T., Lewis S.L., Lloyd J., Llusià J., Louault F., Ma S., Mahecha M.D., Manning P., Massad T., Medlyn B.E., Messier J., Moles A.T., Müller S.C., Nadrowski K., Naeem S., Niinemets Ü., Nöllert S., Nüske A., Ogaya R., Oleksyn J., Onipchenko V.G., Onoda Y., Ordoñez J., Overbeck G., Ozinga W.A. 2011. TRY – a global database of plant traits. Global Change Biology,

203. Koteen, L., Baldocchi, D. Harte, J. 2011. Invasion of non-native grasses causes a drop in soil carbon storage in California grasslands. Environmental Research Letters. 6 044001 doi:10.1088/1748-9326/6/4/044001

202. Grant, R. Baldocchi, D.D. and Ma, S.# 2011. Ecological Controls on Net Ecosystem Productivity of a Seasonally Dry Annual Grassland under Current and Future Climates: Modelling with Ecosys. Agricultural and Forest Meteorology . 152:189-200

201. Kobayashi, H.# ,Baldocchi, D.D., Ryu, Y.#, Chen, Q.#, Ma, S*, Osuna, J.#, Ustin, S. 2011. Modeling Energy and Carbon Fluxes in a Heterogeneous Oak Woodland: A Three-Dimensional Approach. Agricultural and Forest Meteorology. 152:83-100

200. Sonnentag O., Detto M., Vargas R., Ryu Y., Runkle B.R.K., Kelly M. & Baldocchi D.D. (2011) Tracking the structural and functional development of a perennial pepperweed (Lepidium latifolium L.) infestation using a multi-year archive of webcam imagery and eddy covariance measurements. Agricultural and Forest Meteorology, 151, 916-926.

199. Detto, M., Baldocchi, D.D., Anderson, F., Verfaillie, J., Xu, L. 2011. Comparing laser-based open- and closed-path gas analyzers to measure methane fluxes using the eddy covariance method. Agricultural and Forest Meteorology. 151, 1312-1324.

198. Anderson RG, Canadell JG, Randerson JT, Jackson RB, Hungate BA, Baldocchi DD, Ban-Weiss GA, Bonan GB, Caldeira K, Cao L, Diffenbaugh NS, Gurney KR, Kueppers LM, Law BE, Luyssaert S, O'Halloran TL. 2011. Biophysical considerations in forestry for climate protection. Frontiers in Ecology and the Environment. 9, 172-182.

197. Baldocchi D., Detto M., Sonnentag O., Verfaillie J., Teh Y.A., Silver W. & Kelly N.M. (2011) The challenges of measuring methane fluxes and concentrations over a peatland pasture. Agricultural and Forest Meteorology.

196. Vargas R, Carbone MS, Reichstein M, Baldocchi DD (2011) Frontiers and challenges in soil respiration research: from measurements to model-data integration. Biogeochemistry 102, 1-13.

195. Miller GR, Chen XY, Rubin Y, Ma SY, Baldocchi DD (2011) Groundwater uptake by woody vegetation in a semiarid oak savanna. Water Resources Research 46.

194. Ma SY, Baldocchi DD, Mambelli S, Dawson TE. 2011. Are temporal variations of leaf traits responsible for seasonal and inter-annual variability in ecosystem CO2 exchange? Functional Ecology 25, 258-270.

193. Sonnentag O, Detto M, Runkle BRK, Teh YA, Silver WL, Kelly M, Baldocchi DD (2011) Carbon dioxide exchange of a pepperweed (Lepidium latifolium L.) infestation: How do flowering and mowing affect canopy photosynthesis and autotrophic respiration? J. Geophys. Res. 116, G01021.

192. Teh, Y., Silver, W.,. Sonnentag, O., Detto, M., Kelly, M. Baldocchi, D. 2011. Large greenhouse gas emissions from a temperate peatland pasture. Ecosystems. DOI:10.1007/s10021-011-9411-4.

191. Ryu Y, Baldocchi DD, Verfaillie J, Ma S, Falk M, Ruiz-Mercado I, Hehn T, Sonnentag O (2010) Testing the performance of a novel spectral reflectance sensor, built with light emitting diodes (LEDs), to monitor ecosystem metabolism, structure and function. Agricultural and Forest Meteorology. 150, 1597-1606.

190. Rutledge S, Campbell DI, Baldocchi D, Schipper LA (2010) Photodegradation leads to increased carbon dioxide losses from terrestrial organic matter. Global Change Biology. 16, 3065-3074.

189. Richardson, A.D., T.A. Black, P. Ciais, N. Delbart, M.A. Friedl, N. Gobron, D.Y. Hollinger, W.L. Kutsch, B. Longdoz, S. Luyssaert, M. Migliavacca, L. Montagnani, J.W. Munger, E. Moors, S. Piao, C. Rebmann, M. Reichstein, N. Saigusa, E. Tomelleri, R. Vargas, and A. Varlagin, (2010) Influence of spring and autumn phenological transitions on forest ecosystem productivity, Philosophical Transactions of the Royal Society B-Biological Sciences, 365 (1555), 3227-3246.

188. Detto, M.*, Baldocchi, D.D., Katul, G.G. 2010. Scaling properties of biologically active scalar concentration fluctuations in the surface boundary layer over a managed peatland Boundary Layer Meteorology. 136:407-430

187. Baldocchi, D.D ., Ma, S.*, Rambal, S., Misson, L. Ourcival, J-M, Limosin, J-M, Perieria, J.S., Papale, D. (2010) On the Differential Advantages of Evergreenness and Deciduousness in Mediterranean Oak Woodlands. Ecological Applications. 20: 1583-1597

186. Vargas, R.*, Dennis Baldocchi, Michael Allen, Michael Bahn, T. Black, Scott Collins, Jorge Curiel Yuste*, Takashi Hirano, Rachhpal Jassal, Jukka Pumpanen, and Jianwu Tang*. 2010. Looking deeper into the soil: biophysical controls and seasonal lags of soil CO 2 production and efflux across multiple vegetation types. Ecological Applications. 20: 1569-1582.

185. Mahecha MD, Reichstein M, Carvalhais N, Lasslop G, Lange H, Seneviratne SI, Vargas R, Ammann C, Arain MA, Cescatti A, Janssens IA, Migliavacca M, Montagnani L, Richardson AD (2010) Global Convergence in the Temperature Sensitivity of Respiration at Ecosystem Level. Science 329:838-840

184. Beer C, Reichstein M, Tomelleri E, Ciais P, Jung M, Carvalhais N, Rodenbeck C, Arain MA, Baldocchi D, Bonan GB, Bondeau A, Cescatti A, Lasslop G, Lindroth A, Lomas M, Luyssaert S, Margolis H, Oleson KW, Roupsard O, Veenendaal E, Viovy N, Williams C, Woodward FI, Papale D (2010) Terrestrial Gross Carbon Dioxide Uptake: Global Distribution and Covariation with Climate. Science 329:834-838

183. Vargas, R., Detto, M., Baldocchi, D., Allen, M. 2009. Multiscale analysis of temporal variability of soil CO 2 production as influenced by weather and vegetation. Global Change Biology. 16: 1589-1605

182. Curiel Yuste J, Ma S, Baldocchi D (2010) Plant-soil interactions and acclimation to temperature of microbial-mediated soil respiration may affect predictions of soil CO2 efflux. Biogeochemistry 98:127-138

181. Rhew RC, Chen C, Teh YA, Baldocchi D (2010) Gross fluxes of methyl chloride and methyl bromide in a California oak-savanna woodland. Atmospheric Environment 44:2054-2061

180. Vargas, R., Baldocchi, D.D., Querejeta, J.I.,Curtis, P.S., Hasselquist, N.J., Janssens, I.A, Allen, M.F., Montagnani, L. 2009. Ecosystem CO 2 fluxes of arbuscular and ectomycorrhizal dominated vegetation types are differentially influenced by precipitation and temperature. New Phytologist 185:226-236 .

179. Ryu Y, Nilson T, Kobayashi H, Sonnentag O, Law BE, Baldocchi DD (2010) On the correct estimation of effective leaf area index: Does it reveal information on clumping effects? Agricultural and Forest Meteorology 150:463-472

178. Ryu Y, Sonnentag O, Nilson T, Vargas R, Kobayashi H, Wenk R, Baldocchi DD (2010) How to quantify tree leaf area index in an open savanna ecosystem: A multi-instrument and multi-model approach. Agricultural and Forest Meteorology 150:63-76

177. Xiao JF, Zhuang QL, Law BE, Chen JQ, Baldocchi DD, Cook DR, Oren R, Richardson AD, Wharton S, Ma SY, Martini TA, Verma SB, Suyker AE, Scott RL, Monson RK, Litvak M, Hollinger DY, Sun G, Davis KJ, Bolstad PV, Burns SP, Curtis PS, Drake BG, Falk M, Fischer ML, Foster DR, Gu LH, Hadley JL, Katul GG, Roser Y, McNulty S, Meyers TP, Munger JW, Noormets A, Oechel WC, Paw KT, Schmid HP, Starr G, Torn MS, Wofsy SC (2010) A continuous measure of gross primary production for the conterminous United States derived from MODIS and AmeriFlux data. Remote Sensing of Environment 114:576-591

176. Lasslop G, Reichstein M, Detto M, Richardson AD, Baldocchi DD Comment on Vickers et al.: Self-correlation between assimilation and respiration resulting from flux partitioning of eddy-covariance CO2 fluxes. Agricultural and Forest Meteorology 150:312-314

175. Hollinger, D.Y. , S.V. Ollinger, A.D. Richardson, T.P. Meyers, D.B. Dail, M.E. Martin, N.A. Scott, T.J. Arkebauer, D.D. Baldocchi, K. Clark, P.S. Curtis, K. Davis, A. Desai, D. Dragoni, M.L. Goulden, L. Gu, G.G. Katul, S. Pallardy, K.T. Paw U, H. Schmid, P.C. Stoy, A.E. Suyker, and S.B. Verma. 2010. Albedo estimates for land surface models and support for a new paradigm based on foliage nitrogen concentration. Global Change Biology 16: 696-710.

174. Stoy, P. C., A. D. Richardson, D. D. Baldocchi, G. G. Katul, J. Stanovick, M. D. Mahecha, M. Reichstein, M. Detto, B. E. Law, G. Wohlfahrt, N. Arriga, J. Campos, J. H. McCaughey, L. Montagnani, K. T. Paw U, S. Sevanto, and M. Williams. 2009. Biosphere-atmosphere exchange of CO2 in relation to climate: a cross-biome analysis across multiple time scales. Biogeosciences J1 - BG 6 (10):2297-2312.

173. Yuan, W, Luo, Y, Richardson, A.D., Oren, R., Luyssaert, S., Janssens, I.A., Ceuleman, R., Zhou, X., Grunwald, T., Aubinet, M., Bernhofer, Ch., Baldocchi, D.D., Chen, J., Dunn, A.L., Deforest, J., Dragoni, D., Goldstein, A.H., Moores, E., Munger, J.W., Monson, R.K., Suyker, A.E., Starr, G., Scott, R.L., Tenhunen, J., Verma, S.B., Vesala, T., Wofsy, S.C. 2009. Latitudinal patterns of magnitude and interannual variability in net ecosystem exchange regulated by biological and environmental variables. Global Change Biology. Published Online: Jan 15 2009 6:55AM DOI: 10.1111/j.1365-2486.2009.01870.x .

172. White, M.A., K. M. de Beurs, K. Didan, D.W. Inouye, A.D. Richardson, O. P. Jensen, J.O’Keefe, G.Zhang, R.R. Nemani, W.J.D. van Leeuwen, J.F. Brown, A. de Wit, M.Schaepman Xioamao Lin,M.Dettinger, A.S. Bailey, J. Kimball, M. D. Schwartz, D.D.Baldocchi, J.T. Lee, W.K. Lauenroth. 2009. Intercomparison, interpretation, and assessment of spring phenology in North America estimated from remote sensing for 1982 to 2006. Global Change Biology. 15 , 2335–2359. DOI: 10.1111/j.1365-2486.2009.01910.x .

171. Beer, C., Ciais, P., Reichstein, M., Baldocchi, D., Law, B. Papale, D., Soussana, J-F., Amman, C., Buchmann, N., Frank, D., Gianelle, D., Janssens, I.A., Knohl. A., Kostner, B., Moors, E., Roupard, O., Verbeeck, H., Vesala, T., Williams, C.A., Wohlfahrt, G. 2009. Temporal and between-site variability of inherent water-use efficiency on an ecosystem scale. Global Biogeochemical Cycles. GB2018, doi:10.1029/2008GB003233 .

170. Stoy, P. C., A. D. Richardson, D. D. Baldocchi, G. G. Katul, J. Stanovick, M. D. Mahecha, M. Reichstein, M. Detto, B. E. Law, G. Wohlfahrt, N. Arriga, J. Campos, J. H. McCaughey, L. Montagnani, K. T. Paw U, S. Sevanto, and M. Williams. 2009. Biosphere-atmosphere exchange of CO2 in relation to climate: a cross-biome analysis across multiple time scales. Biogeosciences J1 - BG 6 (10):2297-2312

169. Curiel Yuste, J., S. Ma, and D. Baldocchi. Plant-soil interactions and acclimation to temperature of microbial-mediated soil respiration may affect predictions of soil CO2 efflux. Biogeochemistry. 10.1007/s10533-009-9381-1

168. Ryu, Y., O. Sonnentag, T. Nilson, R. Vargas, H. Kobayashi, R. Wenk, and D.D. Baldocchi, How to quantify tree leaf area index in an open savanna ecosystem: A multi-instrument and multi-model approach, Agricultural and Forest Meteorology, 150 (1), 63-76, 2010.

167. Jackson, RB, JT Randerson, JG Canadell, RG Anderson, R Avissar, DD Baldocchi, GB Bonan, K Caldeira, NS Diffenbaugh, CB Field, BA Hungate, EG Jobbágy, LM Kueppers, MD Nosetto, DE Pataki 2008 Protecting climate with forests. Environmental Research Letters, 4, doi 10.1088/1748-9326/3/4/044006.

166. Xiao J, Zhuang Q, Baldocchi DD, Law BE, Richardson AD, Chen J, Oren R, Starr G, Noormets A, Ma S, Verma SB, Wharton S, Wofsy SC, Bolstad PV, Burns SP, Cook DR, Curtis PS, Drake BG, Falk M, Fischer ML, Foster DR, Gu L, Hadley JL, Hollinger DY, Katul GG, Litvak M, Martin TA, Matamala R, McNulty S, Meyers TP, Monson RK, Munger JW, Oechel WC, Paw U KT, Schmid HP, Scott RL, Sun G, Suyker AE, Torn MS (2008) Estimation of net ecosystem carbon exchange for the conterminous United States by combining MODIS and AmeriFlux data. Agricultural and Forest Meteorology 148:1827-1847.

165. Prabha TV, Leclerc MY, Baldocchi D (2008) Comparison of In-Canopy Flux Footprints between Large-Eddy Simulation and the Lagrangian Simulation. J. Appl. Meteor. Climatol., 47, 2115–2128.

164. Chen, X#., Y. Rubin, S. Ma, and D. Baldocchi (2008), Observations and stochastic modeling of soil moisture control on evapotranspiration in a Californian oak savanna, Water Resour. Res., 44, W08409, doi:10.1029/2007WR006646.

163. Chen, Q.#,Baldocchi, D.D., Gong, P. and Dawson, T. 2008. Modeling Radiation and Photosynthesis of a Heterogeneous Savanna Woodland Landscape with a Hierarchy of Model Complexity. Agricultural and Forest Meteorology. 148, 1005-1020

162. Castellví, F., Snyder, R.L. and Baldocchi, D.D., 2008. Surface energy-balance closure over rangeland grass using the eddy covariance method and surface renewal analysis. Agricultural and Forest Meteorology , 148(6-7): 1147-1160.

161. Knohl, A., Baldocchi, D.D. 2008. Effects of diffuse radiation on canopy gas exchange processes in forest ecosystems. . Journal of Geophysical Research, Biogeosciences. 113 : G02023, doi:10.1029/2007JG000663

160. Ryu, Y. #, Baldocchi, D.D.,Ma, S., and Hehn, T. 2008. Interannual variability of evapotranspiration and energy exchange over an annual grassland in California. Journal of Geophysical Research, Atmospheres. 113, D09104, doi:10.1029/2007JD009263

159. Sims,D. A., Rahman, A.F., Cordova, V.D., El-Masri, B.Z., Baldocchi, D.D., Bolstad, P.V, Flanagan, L.D., Goldstein, A.H., Hollinger, D.Y., Misson, L., Monson, R.K., Oechel, W.C.,Schmid, H.P., Wofsy, S.C., Xu, L. 2007. A new model of gross primary productivity for North American ecosystems based solely on the enhanced vegetation index and land surface temperature from MODIS. Remote Sensing of the Environment. 112: 1633-1646.

158. Fisher, J#, Tu, K. Baldocchi, D.D. 2008 Global estimates of the land-atmosphere water flux: a fully-remote sensing driven, flux site-validated ecophysiological model of evapotranspiration. Remote Sensing of the Environment. 112, 901-919.

157. Baldocchi, D.D . 2008. ‘Breathing’ of the Terrestrial Biosphere: Lessons Learned from a Global Network of Carbon Dioxide Flux Measurement Systems. Australian Journal of Botany. 56, 1-26.

156. Baldocchi, D.D ., Wong, S. 2008. Accumulated winter chill is decreasing in the fruit growing regions of California. Climatic Change. 87, S153-S166

155. Ma, S.*, Baldocchi, DD., Xu. L*, Hehn, T. 2007. Interannual variability in carbon exchange of an oak/grass savanna and an annual grassland in California. Agricultural and Forest Meteorology. 147, 157-171

154. Chen, Q., Gong, P, Baldocchi, D.D. and Y.Q. Tian. 2007. Estimating Basal Area and Stem Volume for Individual Trees from LIDAR data. Photogrammetric Engineering & Remote Sensing. 73: 1355-1365.

153. Curiel Yuste J., Baldocchi DD, Misson L., Wong S., Gershenson A, Goldstein A. 2007. Microbial Soil Respiration and its dependency on Carbon Inputs, Soil Temperature, Moisture. Global Change Biology. 13:1-18.

152. Baldocchi D.D ., Liukang Xu. 2007. Evaporation from Mediterranean Oak Woodlands: a Balance between the Supply and Demand for Water by Plants and the Atmosphere. Advances in Water Research. 30, 2113-2122.

151. Sundareshwar, P.V., Murtugudde R., Srinivasan G., Singh S., Ramesh K.J., Agarwal D. , Baldocchi D., Baru C.K., Baruah K.K., Chowdhury G.R., V Dadhwal.K. , Dutt C.B.S., Fuentes J., Gupta P.K., Hargrove W.W., Howard M., Jha C.S. , Lal S. , Michener W.K., Mitra A.P., Morris J.T., Myneni R.R., Naja M., Nemani R., Raha S., Ramesh R., Santhana Vanan S.K. , Sharma M., Subramaniam A. , Sukumar R. , Twilley R.R., Verma S.B., Zimmerman P.R.. 2007. INDOFLUX: A Biogeochemical Monitoring Network for India. Science

150. Misson, L., *Baldocchi DD; Black TA; Blanken PD; Brunet Y; Curiel Yuste J*; Dorsey JR*; Falk M*; Granier A; Irvine MR; Jarosz N; Lamaud E; Launiainen, S; Law BE; Longdoz B; Loustau D; McKay M; Paw U KT; Vesala, T; Vickers D; Wilson KB*; Goldstein AH. 2007. Partitioning Forest Carbon Fluxes with Overstory and Understory Eddy-Covariance Measurements: a Synthesis Based on FLUXNET Data. Agricultural and Forest Meteorology. 144, 14-31.

149. Yuan, W. Liu, S., Zhou, G., Tieszen, L.L., Baldocchi, D., Bernhofer, Ch., Gholz, H., Hollinger, D.Y., Hu, Y., Law, B.E., Stoy, P.C., Vesala, T. and other AmeriFlux collaborators. 2007. Deriving a light use efficiency model from eddy covariance flux data for predicting daily gross primary production across biomes. Agricultural and Forest Meteorology. .144, 189-207.

148. Miller, G. Baldocchi, DD., Law, B. and Meyers, T.P. 2007. An analysis of soil moisture dynamics using multi-year data from a network of micrometeorological observation sites Advances Water Research.30, 1065-1081.

147. Wang, Y.P., Baldocchi, D., Leuning, R., Falge, E. and V esala, T. 2007. Estimating parameters in a land surface model by applying nonlinear inversion to eddy covariance flux measurements from eight FLUXNET sites. Global Change Biology. 13, 652-670.

146. Fisher, J.B #., Baldocchi, D.D., Misson, L, Dawson, T.E., Goldstein, A.H. 2007. What the towers don’t see at night: nocturnal sap flow in trees and shrubs at two Ameriflux sites in California. Tree Physiology, 27: 597-610.

145. Chapin FS, Woodwell GM, Randerson JT, Rastetter EB, Lovett GM, Baldocchi DD, Clark DA, Harmon ME, Schimel DS, Valentini R, Wirth C, Aber JD, Cole JJ, Goulden ML, Harden JW, Heimann M, Howarth RW, Matson PA, McGuire AD, Melillo JM, Mooney HA, Neff JC, Houghton RA, Pace ML, Ryan MG, Running SW, Sala OE, Schlesinger WH, Schulze E-D. 2007. Reconciling Carbon-cycle Concepts, Terminology, and Methods. Ecosystems 9:1041-1050.

144. Sims, D.A.; Rahman, A.F.; Cordova, V. D.; El-Masri, B. Z.; Baldocchi, D.D.; Flanagan, L.B.; Goldstein, A.H.; Hollinger, D. Y.; Misson, L.; Monson, R. K.; Oechel, W. C.; Schmid, H. P.; Wofsy, S. C.; Xu, L.*. 2006. On the use of MODIS EVI to assess gross primary productivity of North American ecosystems. Journal Geophysical Research, Biogeosciences,   Vol. 111, No. G4, G04015. 10.1029/2006JG000162.

143. Snyder, R. L., D. Spano, P. Duce, D. Baldocchi, L. Xu, and K. T. Paw U: A fuel dryness index for grassland fire-danger assessment.2007. Agricultural and Forest Meteorology, 139, 1-11

142. Chen, Q., Gong, P., Baldocchi, D.D., 2006. A Slope Adaptive Method for Separation of Terrain and Vegetation Returns of Small-footprint LIDAR in Forest Area. Photogrammetric Engineering and Remote Sensing ..

141. Chen, Q., Gong, P, Baldocchi, D.D. and G. Xie. 2006. Filtering airborne laser scanning data with morophological methods. Photogrammetric Engineering & Remote Sensing. 73: 175-185

140. Chapin, F.S. III, Woodwell, G.M, Randerson, J.T., Lovett, G.M., Rastetter, E.B., Baldocchi, D.D., Clark, D.A., Harmon, M.E., Schimel, D.S., Valentini R., Wirth C., Aber J.D., Cole J.J., Goulden M.L., Harden J.W., Heimann M., Howarth R.W., Matson P.A., McGuire A.D., Melillo J.M., Mooney,H.A., Neff, J.C., Houghton R.A., Pace M.L., Ryan M.G., Running S.W., Sala O.E., Schlesinger W.H., Schulze E.-D.. 2006. Reconciling Carbon Cycle Concepts, Terminology, and Methodology. Ecosystems. 9: 1041-1050.

139. Grant R.F., Zhang Y., Yuan F., Wang S., Hanson P.J., Gaumont-Guay D., Chen J., Black T.A., Barr A., Baldocchi D.D. & Arain A. (2006) Intercomparison of techniques to model water stress effects on CO2 and energy exchange in temperate and boreal deciduous forests. Ecological Modelling, 196, 289-312.

138. Castellvi, F., Synder, R., Baldocchi, D.D., Martinez-Cob, A. 2006. A Comparison of New and Existing Equations for Estimating Sensible Heat Flux Density using Surface Renewal and Similarity Concepts. Water Resources Research. Vol. 42, W08406, doi:10.1029/2005WR004642, 2006

137. Chen Q., Baldocchi D.D., Gong P. & Kelly M. 2006. Isolating Individual Trees in a Savanna Woodland using Small Footprint LIDAR data. Photogrammetric Engineering & Remote Sensing., 72, 923-932.

136. Baldocchi, D.D ., Tang, J*. Xu, L*. 2006. How Switches and Lags in Biophysical Regulators Affect Spatio-Temporal Variation of Soil Respiration in an Oak-Grass Savanna. Journal of Geophysical Research, Biogeosciences., 111, G02008, doi:10.1029/2005JG000063. .

135. Kucharik, C.J., Barford, C. Mustapha, E., Wofsy, S.C., Monson, R.K. and Baldocchi DD 2006. Evaluation of a dynamic vegetation model at the forest stand level: vegetation structure, phenology and seasonal and interannual CO 2 and H 2O vapor exchange at three AmeriFlux study sites. Ecological Modeling, 196, 1-31

134. Heinsch, F.A., Zhao, M., Running, S.W., Kimbal, J.S., Nemani, R.R., Davis, K.J., Bolstad, P.V., Cook, B.D., Desai, A.R., Ricciuto, D.M., Law, B.E., Oechel, W.C., Kwon, H., Luo, H., Wofsy, S.C., Dunn, A.L., Munger, J.W.,Baldocchi, D.D, Xu, L., Hollinger, D.Y., Richardson, A.D., Stoy, P.C., Siqueira, M., Monson, R.K., Burns, S., Flanagan, L.B. 2006. Evaluation of remote sensing based terrestrial productivity from MODIS using regional tower eddy flux network observations. IEEE Transactions on Geoscience and Remote Sensing 44:1908-1925

133. Kim, J., Guo, Q., Baldocchi, D.D., Leclerc, M Y., Xu, L, Schmid, H-P. 2006. Upscaling Fluxes from Tower to Landscape: Overlaying Flux Footprint s on High Resolution ( IKONOS ) Images of Vegetation Cover. Agricultural and Forest Meteorology.136:132-146.

132. Reichstein, M., Falge, E.,Baldocchi, DD., Papale, D., Valentini, R., Aubinet, M. Berbigier, P., Bernhofer, C., Buchman, N., Gilmanov, T., Granier, A., Grunwald, T., Havrankova, K., Janous, D., Knohl, A., Laurela, T., Lohila, A., Loustau, D., Matteucci, G., Meyers, T., Miglietta, F., Ourcival, J., Rambal, S., Rotenberg, E., Sanz, M. Tenhunen, J., Seufert, G., Vaccari, F., Vesala, T., Yakir, D., Valentini, R., 2005. On the separation of net ecosystem exchange into assimilation and ecosystem respiration: review and improved algorithm, Global Change Biology 11, 1424-1439.

131. Tang, J.,Baldocchi DD., Xu, L 2005. Tree photosynthesis modulates soil respiration in a savanna ecosystem. Global Change Biology 11, 1298-1304.

130. Sims, D.A., Rahman, A.F., Cordova, V.D., Baldocchi DD., Flanagan, L.B., Goldstein,A.H., Hollinger, D.Y, Misson, L., Monson, R.K. Schmid, H.P., Wofsy, S.C., Xu, L. 2005. Midday values of gross CO 2 flux and light use efficiency during satellite overpasses can be used to directly estimate eight-day mean flux. Agricultural and Forest Meteorology. 131, 1-12.

129. Baldocchi, D. D . , Krebs, T. and Leclerc, M.Y. 2005. ‘Wet/Dry Daisyworld’: A Conceptual Tool for Quantifying Sub-Grid Variability of Energy Fluxes over Heterogeneous Landscapes. Tellus B 57(3): 175-188..

128. Tang, J., Baldocchi, DD. 2005. Spatial-temporal Variation of Soil Respiration in an Oak-Grass Savanna Ecosystem in California and its Partitioning into Autotrophic and Heterotrophic Components. Biogeochemistry. 73, 183-207

127. Baldocchi, D.D., T.A. Black, P. Curtis, E. Falge, J.D. Fuentes, A Granier, L. Gu, A Knohl, X. Lee, K Pilegaard, HP Schmid, R. Valentini, S. Wofsy, L. Xu and S. Yamamoto. 2005. Predicting the Onset of Carbon Uptake by Deciduous Forests with Soil Temperature and Climate Data: A Synthesis of FLUXNET Data. International Journal of Biometeorology. 49, 377-387.

126. Gu, L. Falge, E., Boden, T., Baldocchi, D., Black, T.A., Saleska, S., Suni, T., Verma, S., Vesala, T., Wofsy, S., Xu, L. 2005. Objective threshold determination for nighttime eddy flux filtering. Agricultural and Forest Meteorology 128: 179-197.

125. Strong, C., Fuentes, J., Baldocchi, D.D. 2004. Reactive hydrocarbon flux footprints during canopy senescence. Agricultural and Forest Meteorology 127: 159-173.

124. Xu, L, Baldocchi, D.D., Tang, J. 2004. How Soil Moisture, Rain Pulses and Growth Alter the Response of Ecosystem Respiration to Temperature. Global Biogeochemical Cycles. Vol. 18, No. 4, GB4002 10.1029/2004GB002281

123. Kelliher, F.M., Ross, D.J., Law, B.E., Baldocchi, D.D. and Rodda, N.J., 2004. Limitations to carbon mineralization in litter and mineral soil of young and old ponderosa pine forests. Forest Ecology and Management, 191(1-3): 201-213.

122. P.J. Hanson, J.S. Amthor, S.D. Wullschleger, K.B. Wilson, R.F. Grant, A. Hartley, D. Hui, E.R. Hunt jr., D.W. Johnson, J.S. Kimball, A.W. King, Y. Luo, S.G. Mcnulty, G. Sun, P.E. Thornton, S. Wang, M. Williams, D.D. Baldocchi, and R.M. Cushman. 2004. Carbon and water cycle simulations for an upland oak forest using 13 stand-level models: intermodel comparisons and evaluations against independent measurements. Ecological Monographs. 74, 443-489.

121. Baldocchi, DD,Xu L,Kiang N. 2004. How plant functional-type, weather, seasonal drought and soil physical properties alter water and energy fluxes of an oak-grass savanna and an annual grassland.  Agricultural and Forest Meteorology. 123: 13-39

120. Wilson KB, Baldocchi DD, Falge E, Aubinet M, Berbigier P, Bernhofer Ch, Dolman H, Field C, Goldstein H, Granier A, Hollinger D, Katul G, Law BE, Meyers T, Moncrieff J, Monson R, Tenhunen J, Valentini R, Verma S, Wofsy S. 2003. The diurnal centroid of ecosystem energy and carbon fluxes at FLUXNET sites. Journal of Geophysical Research. doi:10.1029/2001JD001349, 2003.

119. Xu L. Baldocchi D. 2004. Seasonal variation in carbon dioxide exchange over a Mediterranean annual grassland in California. Agricultural and Forest Meteorology. 123:79-96.

118. Tang J, Baldocchi D D., Qi Y, Xu L. 2003. Assessing soil CO2 efflux using continuous measurements of  CO2 within the soil profile with small solid-state sensors. Agricultural and Forest Meteorology 118, 207-220.

117. Xu L, Baldocchi DD. 2003. Seasonal trend of photosynthetic parameters and stomatal conductance of blue oak (Quercus douglasii) under prolonged summer drought and high temperature Tree Physiology 23, 865-877

116. Sanderman J, Amundson R. Baldocchi D. 2003. The Effect of Temperature on the Residence Time of Soil Organic Carbon: A Comparative Analysis. Global Biogeochemical Cycles. doi:10.1029/2001GB001833.

115. Gu L, Baldocchi DD, Wofsy SC, Munger JW, Urban, B.,Michalsky JJ, Boden TA. 2002. Response of a deciduous forest to the Mt Pinatubo eruption: enhanced photosynthesis. Science. 299, 2035-2038.

114. Baldocchi DD. 2003. Assessing ecosystem carbon balance: problems and prospects of the eddy covariance technique. Global Change Biology 9, 478-492.

113. Baldocchi, D.D. and Bowling, D.R. 2002. Modeling the discrimination of 13CO2 above and within a temperate broadleaved forest canopy on hour to seasonal time scales Plant, Cell and Environment 26, 231-244

112. Wilson KB, Baldocchi DD, Aubinet M, Berbigier P, Bernhofer Ch, Dolman H, Falge E, Field C, Goldstein H, Granier A, Grelle A, Halldor T., Hollinger D, Katul G, Law BE, Lindroth A, Meyers T, Moncrieff J, Monson R, Oechel W, Tenhunen J, Valentini R, Verma S, Vesala T, Wofsy S. 2002. Surface energy partitioning between latent and sensible heat flux at FLUXNET sites. Water Resources Research vol 38. doi: 10.1029/2001 WR 000989.

111. Falge, E., Baldocchi, D., Tenhunen, J., Aubinet, M., Bakwin, P., Berbigier, P., Bernhofer, Ch., Burba, G., Clement, R., Davis, K.J., Elbers, J.A., Goldstein, A.H., Grelle, A, Granier, A, Guðmundsson, J., Hollinger, D., Kowalski, A, Katul,G., Law,B, Malhi,Y., Meyers,T., Monson,R., Munger,JW, Oechel,W., Paw U,KT., Pilegaard,K, Rannik,U, Rebmann, C, Suyker,A, Valentini, R., Wilson,K, and Wofsy, S. 2002. Seasonality of ecosystem respiration and gross primary production as derived from FLUXNET measurements. Agricultural and Forest Meteorology 113, 53-74

110. Law, B.E., Falge, E., Gu, L., Baldocchi, D., Bakwin, P., Berbigier, P., Davis, K.J., Dolman, H., Falk, M., Fuentes, J., Goldstein, A.H., Granier, A, Grelle, A., Hollinger, D., Janssens, I., Jarvis, P., Jensen, N.O. Katul,G., Malhi,Y., Matteucci, G., Monson,R., Munger, JW, Oechel,W., Olson, R., Pilegaard, K, Paw U, KT, Thorgeirsson, H, Valentini, R., Verma, S. Vesala, T., Wilson,K, and Wofsy,S. 2002. Carbon dioxide and water vapor exchange of terrestrial vegetation in response to environment. Agricultural and Forest Meteorology 113, 97-120.

109. Wilson, K.B., Goldstein, A.H., Falge, E., Aubinet, M., Baldocchi, D., Berbigier, P., Bernhofer, Ch., Ceulemans, R., Dolman, H., Field, C., Grelle, A., Law,B., Meyers,T., Moncrieff, J., Monson, R., Oechel,W., Tenhunen, J., Valentini, R. and Verma, S. 2002. Energy balance closure at FLUXNET sites. Agricultural and Forest Meteorology 113, 223-243.

108. Falge, E., Tenhunen, J., Baldocchi, D. Aubinet, M., Bakwin, P., Berbigier, P., Bernhofer, Ch., Bonnefond, J-M, Burba, G., Clement, R., Davis, K.J., Elbers, J.A., Falk, M., Goldstein, A.H., Grelle, A, Granier, A, Grünwald, T, Guðmundsson, J., Hollinger, D., Janssens, I., Keronen,P., Kowalski,A, Katul,G., Law,B, Malhi,Y., Meyers,T., Monson,R., Moors,E., Munger,JW, Oechel,W., Paw U,KT., Pilegaard,K, Rannik,U, Rebmann,R, Suyker,A, Thorgeirsson,H, Tirone,G, Turnipseed,A, Wilson,K, and Wofsy,S. 2002. Phase and amplitude of ecosystem carbon release and uptake potential as derived from FLUXNET measurements. Agricultural and Forest Meteorology. 113, 75-95

107. Baldocchi, DD, Wilson KB, Gu L. 2002. Influences of structural and functional complexity on carbon, water and energy fluxes of temperate broadleaved deciduous forest. Tree Physiology. 22 1065-1077

106. Anthoni, P.M., Irvine, J., Unsworth, M.H., Baldocchi, D.D., Moore, D., and Law, B.E. 2002. Seasonal differences in carbon and water vapor exchange in young and old-growth ponderosa pine ecosystems. Agricultural and Forest Meteorology. 111, 203-222.

105. Gu, L., D.D. Baldocchi, S. B. Verma, T. A. Black, T. Vesala, E. M. Falge, P.R. Dowty. 2002. Superiority of diffuse radiation for terrestrial ecosystem productivity. Journal of Geophysical Research 107. DOI 10.1029/2001/JD001242

104. Wilson, K.B. and D.D. Baldocchi. 2001. Comparing independent estimates of carbon dioxide exchange over five years at a deciduous forest in the southern United States. Journal of Geophysical Research. 106, 34167

103. Law, B.E, Kelliher, F.M, Baldocchi, D.D., Anthoni, P.M. and Irvine, J. 2001. Spatial and temporal variation in respiration in a young Ponderosa pine forest during a summer drought. Agricultural and Forest Meteorology. 110: 27-43

102. Baldocchi, DD, Falge, E, Gu, L., R. Olson, D. Hollinger, S. Running, P. Anthoni, Ch. Bernhofer, K. Davis, J. Fuentes, A. Goldstein, G. Katul, B. Law, X. Lee, Y. Malhi, T. Meyers, J.W. Munger, W. Oechel, K. Pilegaard, H.P. Schmid, R. Valentini, S. Verma, T. Vesala, K. Wilson and S. Wofsy. 2001. FLUXNET: A New Tool to Study the Temporal and Spatial Variability of Ecosystem-Scale Carbon Dioxide, Water Vapor and Energy Flux Densities. Bulletin of the American Meteorological Society 82: 2415-2435.

101. Wilson, K.B., D.D. Baldocchi and P.J. Hanson. 2001. Leaf age affects the seasonal pattern of photosynthetic capacity and net ecosystem exchange of carbon in a deciduous forest. Plant, Cell and Environment 24, 571-583.

100. Baldocchi, D.D. and K.B.Wilson. 2001. Modeling CO2 and water vapor exchange of a temperate broadleaved forest across hourly to decadal time scales. Ecological Modeling 142, 155-184.

99. Law, B.E., S. van Tuyl, A. Cescatti and D.D. Baldocchi. 2001. Estimation of leaf area index in open canopy ponderosa pine forests at different successional stages and management treatments in Oregon. Agricultural and Forest Meteorology. 108, 1-14.

98. Falge, E., Baldocchi, D.D., Olson, R.J., P Anthoni, M Aubinet, Ch Bernhofer, G Burba, R Ceulemans, R Clement, H Dolman, A Granier, P Gross, Th Grünwald, D Hollinger, N-O Jensen, G Katul, P Keronen, A Kowalski, Chun Ta Lai, B E. Law, T Meyers, J Moncrieff, E Moors, J. W Munger, K Pilegaard, Ü Rannik, C Rebmann, A Suyker, J Tenhunen, K Tu, S Verma, T Vesala, K Wilson, Steve Wofsy. 2001. Gap filling strategies for long term energy flux data sets, a short communication. Agricultural and Forest Meteorology. 107, 71-77.

97. Falge, E., Baldocchi, D.D., RJ. Olson, P. Anthoni, M. Aubinet, Ch. Bernhofer, G. Burba, R. Ceulemans, R. Clement, H. Dolman, A. Granier, P. Gross, T. Grünwald, D. Hollinger, N-O Jenson, G. Katul, P. Keronen , A. Kowalski, CT Lai, B. Law, T. Meyers, J. Moncrief, E.J. Moors, W. Munger, K. Pilegaard, U. Rannik, C. Rebmann, A. Sukyer, J. Tenhunen, K. Tu, S. Verma, T. Vesala, K. Wilson, S. Wofsy. 2001. Gap filling strategies for defensible annual sums of net ecosystem exchange. Agricultural and Forest Meteorology, 107, 43-69.

96. Baldocchi, D.D., E. Falge and K. Wilson. 2001. A spectral analysis of biosphere-atmosphere trace gas flux densities and meteorological variables across hour to year time scales. Agricultural and Forest Meteorology. 107, 1-27.

95. Law, B.E., A. Cescatti, D.D. Baldocchi. 2001. Leaf area distribution and radiative transfer in open-canopy forests: implications to mass and energy exchange. Tree Physiology. 21: 777-787.

94. Wilson, K.B., P.J. Hanson, P. Mulholland, D.D. Baldocchi and S. Wullschleger. 2001. A comparison of methods for determining forest evapotranspiration and its components: sap flow, soil water budget, eddy covariance and catchment water balance. Agricultural and Forest Meteorology. 106, 153-168.

93. Eugster, W., W.R. Rouse, R. Pielke, Sr., J. McFadden, D.Baldocchi, , T. Kittell, F.S. Chapin, G. Liston, P. Vidale, Y. Vagonov and S. Chambers. 2000. Land-atmosphere exchange in Arctic tundra and boreal forests: available data and feedbacks to climate. Global Change Biology. 6, 84-115.

92. Chapin, F.S., A.D. McGuire, J. Randerson, R. Pielke, D.Baldocchi, S.E. Hobbie, N. Roulet, W. Eugster, E. Kasischke, E.B. Rastetter, S.A. Zimov, and S.W. Running. 2000. Arctic and boresl ecosystems of western North American as components of the climate system. Global Change Biology, 6, 211-223.

91. Fuentes, J.D. B.P. Hayden, M. Garstang, M. Lerdau, D. Fitzjarrald, D.D. Baldocchi, R. Monson, B. Lamb and C. Geron. 2000. VOCs and biosphere-atmosphere feedbacks. Atmospheric Environment. 35, 189-191.

90. Baldocchi, D.D., F.M. Kelliher, T.A. Black and P.G. Jarvis. 2000. Climate and vegetation controls on boreal zone energy exchange. Global Change Biology. 6, 69-83.

89. Paw U, K.T. D.D. Baldocchi, T.P.Meyers and K.B. Wilson. 2000. Correction of eddy covariance measurements incorporating both advectiv effects and density fluxes. Boundary Layer Meteorology. 97, 487-511.

88. Rasch P.J., Feichter J., Law K., Mahowald N., Penner J., Benkovitz, C., Genthon C., Giannakopoulos C., Kasibhatla P., Koch D., Levy H., Maki T., Prather M., Roberts D.L., Roelofs G.-J., Stevenson D., Stockwell Z., Taguchi S., Kritz M., Chipperfield M., Baldocchi D., McMurry P., Barrie L., Balkanski Y., Chatfield R., Kjellstrom E., Lawrence M., Lee H.N., Lelieveld J., Noone K.J., Seinfeld J., Stenchikov G., Schwartz S., Walcek C., Williamson D., 2000 A comparison of scavenging and deposition processes in global models: results from the WCRP Cambridge Workshop of 1995. Tellus vol. 52B, 1025-1056.

87. Fuentes, J.D., M. Lerdau, R.Atkinson, D. Baldocchi, J.W. Botteneheim, P. Ciccioli, B. Lamb, C. Geron, L. Gu, A. Guenther, T.D. Sharkey, and W. Stockwell. 2000. Biogenic hydrocarbons in the atmospheric boundary layer: a review. Bulletin of the American Meteorological Society. 81, 1537-1575.

86. Law, B., M. Williams, P. Anthoni, D.D. Baldocchi and M.H. Unsworth. 2000. Measuring and modeling seasonal variation of carbon dioxide and water vapor exchange of a Pinus ponderosa forest subject to soil water deficit. Global Change Biology, 6, 613-630.

85. Wilson, K.B., D.D. Baldocchi and P.J. Hanson. 2000. Spatial and seasonal variability of photosynthesis parameters and their relationship to leaf nitrogen in a deciduous forest. Tree Physiology. 20, 565-587.

84. Canadell, J., H. Mooney, D. Baldocchi, J. Berry, J. Ehleringer, C.B. Field, T. Gower, D. Hollinger, J. Hunt, R. Jackson, S. Running, G. Shaver, S. Trumbore, R. Valentini and B. Yoder. 2000. Carbon metabolism of the terrestrial biosphere. Ecosystems. 3, 115-130.

83. Baldocchi, D.D., J.J. Finnigan, K.W. Wilson, K.T. Paw U, and E. Falge. 2000. On measuring net ecosystem carbon exchange in complex terrain over tall vegetation. Boundary Layer Meteorology. 96: 257-291.

82. Wilson, K.B., D.D. Baldocchi and P.J. Hanson. 2000. Quantifying stomatal and non-stomatal limitation to carbon assimilation resulting from leaf aging and drought in a mature deciduous tree species. Tree Physiology 20, 787-797

81. Wilson, K, P.J. Hanson and D.D. Baldocchi. 2000. Evaporation and energy fluxes beneath a temperate deciduous forest in North America. Agricultural and Forest Meteorology. 102, 83-103.

80. Baldocchi, D.D., B.E. Law and P. Anthoni. 2000. On measuring and modeling energy fluxes above the floor of a homogeneous and heterogeneous conifer forest. Agricultural and Forest Meteorology, 102, 187-206

79. Wilson, K.B. and D.D. Baldocchi. 2000. Seasonal and interannual variability of energy fluxes over a broadleaved temperate deciduous forest. Agricultural and Forest Meteorology. 100: 1-18.

78. Bowling, D.R., D.D. Baldocchi and R.K. Monson. 1999. Dynamics of isotope exchange of carbon dioxide in a Tennessee deciduous forest. Global Biogeochemical Cycles. 13, 903-921.

77. Running, S.W., D.D. Baldocchi, D. Turner S.T. Gower, P. Bakwin and K. Hibbard. 1999. A global terrestrial monitoring network, scaling tower fluxes with ecosystem modeling and EOS satellite data. Remote Sensing of the Environment. 70: 108-127.

76. Bowling, D.R., A.C. Delany, A.A. Turnipseed, D.D. Baldocchi and R.K. Monson. 1999. Modification of the relaxed eddy accumulation technique to maximize measured scalar mixing ratio differences in updrafts and downdrafts. Journal of Geophysical Research. 104, 9121-9133.

75. Malhi, Y., D.D. Baldocchi and P.G. Jarvis. 1999. The carbon balance of tropical, temperate and boreal forests. Plant, Cell and Environment. 22, 715-740.

74. Law, B.E., D.D. Baldocchi, P.M. Anthoni. 1999. Below canopy and soil CO2 fluxes in a Ponderosa pine forest. Agricultural and Forest Meteorology. 94, 171-188

73. Baldocchi, D.D., J. Fuentes, D. Bowling, A. Turnipseed and R. Monson. 1999. Scaling isoprene fluxes from leaves to canopies: test cases over a boreal aspen and a mixed temperate forest. Journal of Applied Meteorology, 38: 885-898.

72. Fuentes, JD, Baldocchi DD, Lamb B. 1999. Hydrocarbon Special Issue. Journal of Applied Meteorology, 38: (7) 849-854.

71. Hall, B., C. Claiborn and D.D. Baldocchi. 1999. Measurement and modeling of the dry deposition of peroxides. Atmospheric Environment. 33: 577-589.

70. Steffen, W., I. Noble, J. Canadell, M. Apps, d. Schulze, P. Jarvis, D. Baldocchi, P. Ciais, W. Cramer, J. Ehleringer, G. Farquhar, C. Field, A. Ghazi, R. Gifford, M. Heimann, R. Houghton, P. Kabat, C. Korner, E. Lambin, S. Linder, J. Lloyd, H. Mooney, D. Murdiyarso, W. Post, C. Prentice, M. Raupach, D. Schimel, A. Shvidenko, R. Valentini. 1998. The terrestrial carbon cycle: implications for the Kyoto protocol. Science. 280: 1393-1394

69. Bowling, D.R., A.A. Turnipseed, A.C. Delany, D.D. Baldocchi, J.P. Greenberg and R.K. Monson. 1998. The use of relaxed eddy accumulation to measure biosphere-atmosphere exchange of isoprene and other biological trace gases. Oecologia 116: 306-315.

68. Sharkey, T.D., F. Loreto, D. Baldocchi and A. Guenther. 1997. The BEMA project: A North American perspective. Atmospheric Environment. 31: 251-255.

67. Baldocchi, D.D and T.P. Meyers. 1998. On using eco-physiological, micrometeorological and biogeochemical theory to evaluate carbon dioxide, water vapor and gaseous deposition fluxes over vegetation. Agricultural and Forest Meteorology 90: 1-26.

66. Sellers, P.J., F.G. Hall, R.D.Kelly, A.Black, D. Baldocchi, J.Berry, H. Margolis, M.Ryan, J. Ranson, P.Crill, D. Lettenmaier, J Cihlar, J Newcomer, D Halliwell, D. Fitzjarrald, P. Jarvis, S. Gower, D. Williams, B. Goodison, D. Wickland and F. Guertin. 1997. Boreas in 1997: Scientific results, experimental overview and future directions. Journal of Geophysical Research. 102: 28731- 28770.

65. Bonan, G.B., K.J. Davis, D.D. Baldocchi, D. Fitzjarrald and H. Neumann. 1997. Comparison of the NCAR LSM1 land surface model with BOREAS aspen and jack pine tower fluxes, Journal of Geophysical Research. 102: 29065-29076.

64. Lavigne, M.B., M.G. Ryan, D.E. Anderson, D.D. Baldocchi, P.M. Crill, D.R. Fitzjarrald, M.L. Goulden, S.T. Gower, J.M. Massheder, J.H. McCauhey, M.Rayment, and R.G. Striegl. 1997. Comparing nocturnal eddy covariance measurements to estimates of ecosystem respiration made by scaling chamber measurements. Journal of Geophysical Research. 102: 28977-28986.

63. Desjardins, R.L., J.I. MacPherson, L. Mahrt, P. Schuepp, E. Pattey, H. Neumann, D. Baldocchi, S. Wofsy, D. Fitzjarrald and H. McCaughey. 1997. Scaling up flux measurements for the boreal forest using aircraft-tower combinations. Journal of Geophysical Research 102: 29125-29134.

62. Norman, J.M., C,J. Kucharik, S.T. Gower, D.D. Baldocchi, P.M. Crill, M. Rayment, K. Savage and R.G. Striegl. 1997. A comparison of six methods for measuring soil surface carbon dioxide fluxes. Journal of Geophysical Research 102: 28771-28778.

61. Baldocchi, D.D., C.A. Vogel and B. Hall. 1997. Seasonal variation of energy and water vapor exchange rates above and below a boreal jackpine forest. Journal of Geophysical Research 102: 28939-28952.

60. Baldocchi, D.D. 1997. Flux footprints under forest canopies. Boundary Layer Meteorology 85: 273-292.

59. Baldocchi, D.D. 1997. Measuring and modeling carbon dioxide and water vapor exchange over a temperate broad-leaved forest during the 1995 summer drought. Plant, Cell and Environment. 20: 1108-1122.

58. Saugier, B., A. Granier, J.Y. Pontailler, E. Dufrene and D.D. Baldocchi. 1997. Transpiration of a boreal pine forest, measured by branch bags, sapflow and micrometeorological methods. Tree Physiology. 17: 511-520.

57. Baldocchi, D.D., C.A. Vogel and B. Hall. 1997. Seasonal variation of carbon dioxide exchange rates above and below a boreal jackpine forest. Agricultural and Forest Meteorology 83: 147-170.

56. Guenther, A., W. Baugh, K. Davis, P. Harley, L. Klinger, P. Zimmerman, E. Allwine, S. Dilts, B. Lamb, H. Westberg, D. Baldocchi, C. Geron and T. Pierce. 1996. Leaf, canopy and landscape isoprene fluxes from an oak-pine-mixed deciduous forest. Journal of Geophysical Research. 101 : 18555-18568.

55. Lamb, B., E. Allwine, S. Dilts, H. Westberg, T. Pierce, C. Geron, D. Baldocchi, A. Guenther, L. Klinger, P. Harley and P. Zimmerman. 1996. Evaluation of forest canopy models for estimating isoprene emissions. Journal of Geophysical Research. 101 : 22787-22797.

54. Greco, S. and D.D. Baldocchi. 1996. Seasonal variations of CO2 and water vapor exchange rates over a temperate deciduous forest. Global Change Biology. 2: 183-198.

53. Baldocchi, D.D., R.Valentini, S.R. Running, W. Oechel and R. Dahlman. 1996. Strategies for measuring and modelling CO2 and water vapor fluxes over terrestrial ecosystems. Global Change Biology. 2: 159-168.

52. Baldocchi, D.D. and C.Vogel. 1996. A comparative study of water vapor, energy and CO2 flux densities above and below a temperate broadleaf and a boreal pine forest. Tree Physiology. 16: 5-16.

51. Baldocchi, D.D. and K.S. Rao. 1995. Intra-field variability of scalar flux densities across a transition between a desert and an irrigated potato field. Boundary Layer Meterology. 76. 109-136.

50. Sellers, P.J., F.G. Hall, H.Margolis, B. Kelly, D. Baldocchi, J. denHartog, J.Cihlar, M.Ryan, B. Goddison, P.Crill, J.Ranson, D.Lettenmaier and D. Wickland. 1995. Boreal Ecosystem Atmsophere (BOREAS): an overview and early results from the 1994 field year. Bulletin of the American Meteorological Society. 76: 1549-1577.

49. Ruimy, A., P.G. Jarvis, D.D. Baldocchi and B.Saugier. 1995.CO2 fluxes over plant canopies: a literature review. Advances in Ecological Research. 26: 1-68.

48. Vogel, C.A., D.D. Baldocchi, A.K. Luhar and K.S. Rao. 1995. A comparison of a hierarchy of models for determining energy balance components over vegetation canopies. Journal of Applied Meteorology. 34: 2182-2196.

47. Baldocchi. D.D., A. Guenther, P.C. Harley, L.Klinger, P.Zimmerman, B.Lamb and H. Westberg. 1995. The fluxes and air chemistry of isoprene above a deciduous hardwood forest. Proceedings of the Royal Society of London, A. 351: 279-296.

46. Harley, P.C. and Baldocchi, 1995.Scaling carbon dioxide and water vapor exchange from leaf to canopy in a deciduous forest:leaf level parameterization. Plant, Cell and Environment. 18: 1146-1156.

45. Baldocchi, D.D. and P.C. Harley. 1995. Scaling carbon dioxide and water vapor exchange from leaf to canopy in a deciduous forest: model testing and application. Plant, Cell and Environment. 18: 1157-1173.

44. Baldocchi, D.D. 1994. An analytical solution for coupled leaf photosynthesis and stomatal conductance models. Tree Physiology 14: 1069-1079.

43. Erisman, Jan Willem and D.D. Baldocchi. 1994. Modeling dry deposition of SO2. Tellus 46B, 159-171.

42. Baldocchi, D.D. 1994. A comparative study of mass and energy exchange over a closed (wheat) and an open (corn) canopy: II. Canopy CO2 exchange and water use efficiency. Agricultural and Forest Meteorology. 67: 291-322.

41. Baldocchi, D.D. 1994. A comparative study of mass and energy exchange over a closed (wheat) and an open (corn) canopy: I. the partitioning of available energy into latent and sensible heat exchange. Agricultural and Forest Meteorology 67: 191-220.

40. Meyers, T.P. and D.D. Baldocchi. 1993. Trace gas exchange above the floor of a deciduous forest. II. SO2 and O3 deposition. Journal of Geophysical Research. 98: 12631-12638.

39. Doran, J.C., F.J. Barnes, R.L. Coulter, T.L. Crawford, D.D. Baldocchi, L. Balick, D.R. Cook, D. Cooper, R.J. Dobosy, W.A. Dugas, L. Fritschen, R.L. hart, L. Hipps, J.M. Hubbe, W. Gao, R.Hicks, R.R. Kirkham, K.E. Kunkel, T.J. Martin, T.P.Meyers, W.Porch, J.D.Shannon, W.J.Shaw, E.Swiatek, C.D. Whiteman. 1992. The Boardman Regional Flux Experiment Bulletin of the American Meteorological Society. 73: 1785-1795.

38. Baldocchi, D.D. 1992. A Lagrangian random walk model for simulating water vapor, CO2, and sensible heat flux densities and scalar profiles over and within a soybean canopy. Boundary Layer Meteorology. 61:113-144.

37. Grant, R.F. and Baldocchi, D.D. 1992. Energy transfer over crop canopies: simulation and experimental verification. Agricultural and Forest Meteorology. 61: 129-149.

36. Chason, J., D.D. Baldocchi and M. Huston. 1991. A comparison of direct and indirect methods for estimating forest canopy leaf area. Agricultural and Forest Meteorology 57:107-128.

35. Fowler, D., J. Duyzer, and D.D. Baldocchi. 1991. Inputs of trace gases, particles and cloud droplets to terrestrial surfaces. Proceedings Royal Society of Edinburgh. 97B 35-59.

34. Baldocchi, D.D., R.J. Luxmoore and J.L. Hatfield. 1991. How to discern the forest from the trees: an essay on scaling canopy stomatal conductance. Agricultural and Forest Meteorology. 54: 197-226.

33. Baldocchi, D.D. and T.P. Meyers. 1991. Trace gas exchange at the floor of a deciduous forest: I. evaporation and CO2 efflux. Journal Geophysical Research, Atmospheres. 96: 7271-7285.

32. Meyers, T.P. and D.D. Baldocchi. 1991. The budgets of turbulent kinetic energy and momentum flux within and above a forest canopy. Agricultural and Forest Meteorology. 53: 207-22.

31. Baldocchi, D.D., R. White and J.W. Johnston. 1989. A wind tunnel study to design large, open-top chambers for whole-tree, pollutant exposure experiments. Journal of the Air Pollution Control Association. 39: 1549-1556.

30. Baldocchi, D.D. and T.P. Meyers. 1989. The effects of extreme turbulent events on the estimation of aerodynamic variables in a deciduous forest canopy. Agricultural and Forest Meteorology. 48: 117-134.

29. Baldocchi, D.D. 1989. Turbulence transfer in a deciduous forest. Tree Physiology. 5: 357-377.

28. Wang, H. and D.D. Baldocchi. 1989. A numerical model for canopy radiation within a deciduous forest. Agricultural and Forest Meteorology. 46:313-337.

27. Baldocchi, D.D. and T.P. Meyers. 1988. A spectral and lag-correlation analysis of turbulence in a deciduous forest canopy. Boundary Layer Meteorology. 45:31-58.

26. Meyers, T.P. and D.D. Baldocchi. 1988. A comparison of models for deriving dry deposition fluxes of O3 and SO2 to a plant canopy. Tellus. 40B: 270-284.

25. Baldocchi, D.D., B.B. Hicks and T.P. Meyers. 1988. Measuring biosphere-atmosphere exchanges of biologically related gases with micrometeorological methods. Ecology. 69:1331-1340.

24. Baldocchi, D.D. 1988. A multi-layer, resistance-analog model for estimating sulfur dioxide deposition to a deciduous oak forest canopy. Atmospheric Environment. 22: 869-884.

23. Baldocchi, D.D. and T.P. Meyers. 1988. Turbulence structure in a deciduous forest. Boundary Layer Meteorology. 43: 345-365.

22. Baldocchi, D.D. and B.A. Hutchison. 1988. Turbulence in an almond orchard: spatial variations in spectra and coherence. Boundary Layer Meteorology. 42: 293-311.

21. Hicks, B.B., D.D. Baldocchi, T.P. Meyers, D.R. Matt and R.P. Hosker, Jr. 1987. A multiple resistance routine for deriving dry deposition velocities from measured quantities. Water Air and Soil Pollution. 36: 311-330.

20. Baldocchi, D.D. and B.A. Hutchison. 1987. Turbulence in an almond orchard: vertical variations in turbulent statistics. Boundary Layer Meteorology. 40: 127-146.

19. Baldocchi, D.D., S.B. Verma and D.E. Anderson. 1987. Canopy photosynthesis and water use efficiency in a deciduous forest. Journal Applied Ecology. 24: 251-260.

18. Baldocchi, D.D., B.B. Hicks and P. Camara. 1987. Canopy stomatal resistance model for gaseous deposition to vegetated canopies. Atmospheric Environment. 21:91-101.

17. Baldocchi, D.D., S.B. Verma, D.E. Anderson and D.R. Matt. 1986. Eddy correlation measurements of CO2 efflux from the floor of an oak-hickory forest. Journal Applied Ecology. 23: 967-977.

16. Baldocchi, D.D. and B.A. Hutchison. 1986. On estimating canopy photosynthesis and stomatal conductance in a deciduous forest with clumped foliage. Tree Physiology. 2: 155-168.

15. Anderson, D.E., S.B. Verma, R.E. Clement, D.D. Baldocchi and D.R. Matt. 1986. Turbulence spectra of CO2, water vapor, temperature and velocity over a deciduous forest. Agricultural Forest Meteorology. 38:81-99.

14. Verma, S.B., D.D. Baldocchi, D.E. Anderson, D.R. Matt and R.E. Clement. 1986. Eddy Fluxes of CO2, water vapor and sensible heat over a deciduous forest. Boundary Layer Meteorology. 36:71-91.

13. Baldocchi, D.D., B.A. Hutchison, D.R. Matt and R.T. Mc Millen. 1986. Seasonal variations in the statistics of photosynthetically active radiation penetration in an oak-hickory forest. Agricultural Forest Meteorology. 36:343-361.

12. Baldocchi, D.D., S.B. Verma, N.J. Rosenberg, B.L. Blad and J.E. Specht. 1985. Microclimate-plant architecture interactions: influence of leaf width on the mass and energy exchanges of a soybean canopy. Agricultural Forest Meteorology. 35:1-20.

11. Baldocchi, D.D., S.B. Verma and N.J. Rosenberg. 1985. Water use efficiency in a soybean field: influence of plant water stress. Agricultural Forest Meteorology 34:54-65.

10. Baldocchi, D.D., B.A. Hutchison, D.R, Matt and R.T. McMillen. 1985. Canopy radiative transfer models for spherical and known leaf inclination distribution angles: a test in an oak-hickory forest. Journal Applied Ecology. 22:539-555.

9. Baldocchi, D.D., B.A. Hutchison, D.R, Matt and R.T. McMillen. 1984. Seasonal variations in the radiation regime within an oak-hickory forest. Agricultural Forest Meteorology. 33:177-191.

8. Baldocchi, D.D., D.R. Matt, B.A.Hutchison and R.T. McMillen. 1984. Solar radiation within an oak-hickory forest:an evaluation of extinction coefficients for several radiation components during fully-leafed and leafless periods. Agricultural Forest Meteorology. 32:307-322.

7. Baldocchi, D.D., S.B. Verma, N.J. Rosenberg, B.L. Blad, A. Garay and J.E. Specht. 1983. Influence of leaf pubescence on the mass and energy exchange between soybean canopies and the atmosphere. Agronomy Journal. 75:537-542.

6. Baldocchi, D.D., S.B. Verma, N.J. Rosenberg, B.L. Blad, A. Garay and J.E. Specht. 1983. Influence of water stress on the diurnal exchange of mass and energy between the atmosphere and a soybean canopy. Agronomy Journal. 75:543-548.

5. Baldocchi, D.D., S.B. Verma and N.J. Rosenberg. 1983. Microclimate within soybeans. Agricultural Meteorology. 28:321-337.

4. Baldocchi, D.D., S.B. Verma and N.J. Rosenberg. 1983. Characteristics of air flow above and within soybean canopies. Boundary Layer Meteorology. 25:43-54.

3. Baldocchi, D.D., S.B. Verma and N.J. Rosenberg. 1981. Mass and energy exchange of a soybean canopy under various environmental regimes. Agronomy Journal. 73:706-710.

2. Baldocchi, D.D., S.B. Verma and N.J. Rosenberg. 1981. Environmental effects on the carbon dioxide flux and carbon dioxide-water flux ratio of alfalfa. Agricultural Meteorology. 24: 175-184.

1. Baldocchi, D.D., S.B. Verma and N.J. Rosenberg. 1981. Seasonal and diurnal variation in the carbon dioxide and carbon dioxide-water flux ratio of alfalfa. Agricultural Meteorology. 23: 231-244.

         
    This material is based upon work supported by the National Science Foundation and US Department of Energy. Any opinions, findings, conclusions, or recommendations expressed in the material are those of the author(s) and do not necessarily reflect the views of the supporters.