Hoppy Beer— Minus the Hops
Ask any beer connoisseur what differentiates artisanal brews and traditional light American lagers, and you’re likely to hear the word “hoppy.” Now a team of biologists, including plant and microbial biology (PMB) PhD candidate Rachel Li and PMB adjunct professor Henrik Scheller, has come up with a way to develop the unique flavors and aromas associated with hops without actually using any.
The team created strains of brewer’s yeast that not only ferment the beer but also produce two of the prominent flavor notes provided by hops. The engineered yeast strains were developed using CRISPR-Cas9, a gene-editing tool co-discovered at UC Berkeley.
According to the researchers, whose paper appeared in March in the journal Nature Communications, excessive amounts of water, fertilizer, and energy are required to grow and transport hops, all of which could be avoided by using yeast to make a hoppy-tasting brew. On average, producing 1 pint of a craft beer takes 50 pints of water merely to grow the hops, which are the dried flowers of the climbing plant Humulus lupulus. Another issue is that hops’ flavorful essential oils are highly variable from year to year and from plot to plot, whereas using a standardized yeast ensures uniformity of flavor. And hops are expensive.
Li is now the cofounder of a start-up called Berkeley Brewing Science. The company hopes to market hoppy yeasts to brewers and to create other strains that incorporate plant flavors not typical of beer brewed from the canonical ingredients: water, barley, and yeast.
— Adapted from an article by Robert Sanders
Wildlife Work the Night Shift
Human activity is causing mammals to avoid daylight and seek the protection of darkness, reports a new study led by College of Natural Resources scientists. The study, published in June in Science and supported in part by the National Science Foundation, represents the first effort to quantify the global effects of humans on the daily patterns of wildlife. It sheds light on the process by which animals are altering their behaviors in reaction to human disturbance.
“Catastrophic losses in wildlife populations and habitats as a result of human activity are well documented,” said environmental science, policy, and management (ESPM) PhD candidate and study lead author Kaitlyn Gaynor, “but the subtler ways in which we affect animal behavior are more difficult to detect and quantify.”
Gaynor and her co-authors—including ESPM professor Justin Brashares and alumna Cheryl Hojnowski, PhD ’17 ESPM—used data for 62 species across six continents to look for global shifts in the timing of mammals’ daily activity in response to humans.
Data collection involved such approaches as remotely triggered cameras, GPS and radio collars, and direct observation. For each species in a study site, the authors quantified the difference in nocturnality under conditions of low and high human disturbance.
“While we expected to find a trend toward increased wildlife nocturnality around people, we were surprised by the consistency of the results around the world,” Gaynor said. “Animals responded strongly to all types of human disturbance, regardless of whether people actually posed a direct threat, suggesting that our presence alone is enough to disrupt their natural patterns of behavior.”
— Mackenzie Smith
Artificially Cooling the Earth Won’t Prevent Crop Damage
Recently, scientists have pointed to instances of global cooling caused by gases emitted during massive volcanic eruptions and argued that humans could inject particles into the upper atmosphere to artificially cool the earth, alleviating greenhouse warming caused by increased levels of carbon dioxide. Aerosols—in the case of the eruptions, tiny droplets of sulfuric acid—reflect a small percentage of sunlight back into space, reducing the earth’s temperature by a few degrees.
However, a new analysis by UC Berkeley researchers reveals that injecting particles into the atmosphere to counter the warming effects of climate change would do nothing to offset the crop damage from rising global temperatures. After analyzing the past effects of earth-cooling volcanic eruptions and the response of crops to changes in sunlight, the team concluded that any improvements in yield resulting from cooler temperatures would be negated by lower plant productivity due to reduced sunlight.
“Shading the planet keeps things cooler, which helps crops grow better. But plants also need sunlight to grow, so blocking sunlight can affect growth,” said study co–lead author Jonathan Proctor, a doctoral candidate in the Department of Agricultural and Resource Economics and a doctoral fellow at Berkeley’s Global Policy Laboratory (GPL). “For agriculture, the unintended impacts of solar geoengineering are equal in magnitude to the benefits. It’s a bit like performing an experimental surgery: The side effects of treatment might be as bad as the illness.”
“It’s similar to using one credit card to pay off another credit card: At the end of the day, you end up where you started without having solved the problem,” said co–lead author, Chancellor’s Associate Professor of Public Policy, and GPL director Solomon Hsiang, offering another analogy. Proctor and Hsiang reported their findings in August in Nature.
The team linked data on maize, soy, rice, and wheat production in 105 countries from 1979 to 2009 to global satellite observations of the aerosols from volcanic eruptions to study their effect on agriculture. Pairing the results with global climate models, the team calculated that the effects of sunlight loss resulting from a sulfate-based geoengineering program would cancel out the intended benefits of protecting crops from damaging extreme heat.
— Robert Sanders
Hydropower and the Industrial Workweek
A study published in Global Change Biology in April demonstrates that hydropower—a critical energy source for humans worldwide—introduces artificial flow patterns into rivers, negatively affecting invertebrate biodiversity downstream. The study’s lead author, Albert Ruhi, joined the Department of Environmental Science, Policy, and Management as an assistant professor in January.
Aquatic invertebrates are very diverse in running waters and perform key roles: Many convert algae or detritus into living animal biomass, funneling energy into and out of river habitats. Each species has a different suite of roles, and maintaining that diversity is key to a river ecosystem’s healthy functioning.
Using time-series methods like wavelets, Ruhi and his collaborators found that flow-regime alterations caused by hydropower dams often corresponded to the industrial workweek, resulting in hydropeaking (sudden releases of water to support peak power demand) Monday through Friday. This artificial schedule had varying effects on invertebrates. While 3 groups did well under this regime of periodic pulses, 16 were negatively affected—causing a net decrease in functional diversity.
Ruhi and his colleagues analyzed 11 years’ worth of data on invertebrates and combined it with river-discharge data that the U.S. Geological Survey has been recording since 1942. They focused their study on the Chattahoochee River, below Lake Lanier in northern Georgia, then showed that the “workweek effect” is widespread across the American Southeast.
The researchers were further able to project that the risk of observing functional-diversity losses within the next four years would decrease by an average of 17 percent if hydropeaking were lessened.
“We must work to better mitigate the ecological impacts of flow management for hydropower,” Ruhi said. “Understanding how freshwater biodiversity responds to different facets of streamflow alteration may be a first step toward operating dams in a greener way.”
— Kirsten Mickelwait
Why I Do Science
Photo: Courtesy of Danica Chen.
Growing up in China after the Cultural Revolution, we were encouraged to excel in science and technology. When I was applying for college, my father recommended that I pursue international accounting at Xiamen University, but the only slot available in that major for my whole province had already been filled. My brother happened to hear that they still had an opening in cell biology. When I was just 19, he set me on my path as a biologist.
After receiving my PhD in HIV transcription, I decided to change my research focus to aging. How we lose the ability to maintain homeostasis and become susceptible to diseases as we age remains an outstanding question in biology. The idea that we might be able to control the aging process was very exciting to me, and this became one cornerstone of my lab.
A related foundational concept is health span: the number of years one can live a healthy life. As aging is arguably the single biggest risk factor for numerous diseases, understanding the cellular pathways that control aging holds the promise of identifying therapeutic targets for not just one ailment but many simultaneously. My research aims to understand the molecular and cellular mechanisms underlying aging-associated conditions and to identify which aspects of these conditions are reversible.
In biology, there are more female than male students from the undergraduate to the postdoc level, but that doesn’t seem to be translating into a better gender balance among tenured professors. I’d like to find ways to help women aim high and to create safe and inclusive work environments. Berkeley should aim to be a leader in providing an environment that fosters these values.
Danica Chen is an associate professor of metabolic biology in the Department of Nutritional Sciences and Toxicology, as well as a member of the Berkeley Stem Cell Center and the QB3 Consortium in Lifespan Extension.
Bottled Water Is Not Necessarily Better Water
In a July article published in Nature Sustainability, two Energy and Resources Group (ERG) researchers identified the global risks of the planet’s increasing reliance on bottled water. The rapid growth of the market for bottled water and its normalization as daily drinking water cannot guarantee universal access, argued Isha Ray, an ERG associate professor, and Alasdair Cohen, PhD ’16 Environmental Science, Policy, and Management (ESPM), a postdoctoral researcher. Instead, the most viable means of achieving universal safe water access continues to be sustained investment in centralized and community utilities.
While economically developed countries have reached near-universal access to drinking water through publicly owned or regulated water utilities, in most low- and middle-income countries (LMICs), the adoption of safe piped water has been slow. Bottled water is now the fastest-growing form of access to purportedly safe drinking water in LMICs.
Of the top 10 bottled-water-consuming nations over the past decade, 6 have been LMICs (Brazil, China, India, Indonesia, Mexico, and Thailand). The latter countries’ consumption of bottled water increased by 174 percent during that period, compared with a 26 percent increase for the high-income countries in the group.
Primarily using bottled water has negative implications across social, economic, health, and environmental lines. “In the short to medium term,” the authors note, “LMIC governments should evaluate non-tap options that could expand safe water access.”
Community-scale kiosk models, in which disinfected municipal water is delivered at low or no cost in reusable 19-liter bottles, are more sustainable and affordable than commercially sold bottled water.
“If governments and development agencies allow the bottled water sector to continue meeting the rising demand for safe water, then access will continue to grow, but it will likely not be reliably safe or universally affordable,” Ray said.
— Kirsten Mickelwait
CNR Expertise at Work
Meredith Fowlie, an associate professor in the Department of Agricultural and Resource Economics, has been appointed to the Independent Emissions Market Advisory Committee, which serves the California Environmental Protection Agency. The committee is tasked with performing annual reviews of California’s cap-and-trade program and other state-mandated environmental initiatives, to evaluate their effectiveness in working toward reducing greenhouse gas emissions to 40 percent below 1990 levels by 2030.
The Intergovernmental Panel on Climate Change (IPCC) has selected Patrick Gonzalez, an ESPM adjunct associate professor, as a lead author of a chapter on ecosystems in its next major climate change assessment, Climate Change 2021: Impacts, Adaptation, and Vulnerability. The IPCC’s reports on human-caused climate change serve as the international standard reference for scientists and policy makers, and the panel was a corecipient of the 2007 Nobel Peace Prize.